Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 553 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 77.0 bits (188), Expect = 2e-18
 Identities = 112/485 (23%), Positives = 195/485 (40%), Gaps = 71/485 (14%)

Query: 123 LRPEARFHDGHPMRADDVVFTFNALIKDGAPLYRQY-YADVAEVVAEEPLKVLFKFKHKN 181
           LR + ++HDG P  A+DV FT   L+      +R+  +  V ++    P ++ +K + K 
Sbjct: 117 LRDDVKWHDGKPFTAEDVKFTLELLVDPNFRSWRKTGHEFVRDLTVVSPTEITWKME-KP 175

Query: 182 NRELPLILGQLPVLPKHWYENREFNRGNL---EIPLGSGPYKVAKVKAGRSVRYERVKDY 238
               P IL    + PKH     E +R        P+G+G +K  +  AG  +  E   DY
Sbjct: 176 FAPYPSILASTFITPKHLL-GAEADRNTAAYNNAPVGTGAFKWKERVAGDYILLEANADY 234

Query: 239 WAKDLPINRGFYNFDAMTFDAYRDTTVALEALKAGAFDYGLEVSAKNWATAYNVPAVREG 298
           +     I R  Y +         D  V     K G  D    V    W T  +     E 
Sbjct: 235 FGDGPHIERLIYKY-------VPDLNVLYTQFKTGDID----VVGLQWITPDHYD---EA 280

Query: 299 RLIKEELPNGNP-TGMQGFIFNIRRPVFQDVRVRQALSLLLDYEWTNKQLFNGAYTRTGS 357
           + +  ++ N  P + ++   FN+ RP F+D  VR+AL   +D +   + L+         
Sbjct: 281 KDLSGKVVNVVPGSTIESLSFNMERPQFKDPAVREALYAAIDKQSIIEALY--------- 331

Query: 358 YFENSEMAARGLPSPNELKILEPLRGKVPEQVFTEVFHNPVSDGSGMIREQQRQAYKLLQ 417
                     GLP+P E          VP+Q F   ++NP         E   +A KLL+
Sbjct: 332 ---------YGLPAPTE--------SYVPQQSF---YYNPDLPKHEYSIE---RAKKLLE 368

Query: 418 EAGWKIVDDKMVDAQGKPASIEFLLAQTE----FERILLPFKRNLADLGIELNIRRVDVS 473
           +AGW    D +    G    + F  + T      E++    +++  D+G+E+ I  +  +
Sbjct: 369 DAGWVAGADGVRAKDG--VKLAFTCSTTAGNHIREQVQQYIQQSFKDIGVEMTISNLPPA 426

Query: 474 -QYITRLRSRDYDMIVGGYPQSNSPGNEQREFWSSAAADNPG--SRNFIGLRDPAIDQLV 530
             +        +D ++ G      P  +  +F+ S ++   G   +N     +  +D+L+
Sbjct: 427 VMWGDYWMLSKFDSVIVGLDFLTGPDPDTSDFFRSTSSPAKGGSGQNTWQFANKEVDELL 486

Query: 531 ---DQLINADSRQSLIDHCRALDRVLLWGYYVIPNWHIKTWRVAYWNHIGHPNVSPKYDI 587
                L   + R+++    + + R  L    ++P +   T R    +  G  NV P  + 
Sbjct: 487 AKGGSLFVPEERKAVYLKIQEIMRKEL---PLLPLFQYATVR---GHKQGVENVKPNVNT 540

Query: 588 GIDTW 592
            IDTW
Sbjct: 541 RIDTW 545