Pairwise Alignments

Query, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 614 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

 Score =  469 bits (1206), Expect = e-136
 Identities = 253/602 (42%), Positives = 363/602 (60%), Gaps = 19/602 (3%)

Query: 9   RLAGSLLLACLSLPALAAPQHA------LTLYDEPPKYPADFKHFDYVNPDAPKGGTFRQ 62
           R+  +L  + L +PA+A+ Q        ++   E  K+P  F HFDYVN  APKGGT R 
Sbjct: 9   RILIALAASALLIPAVASAQSTDVWRKGISTVGEL-KHPDGFDHFDYVNTKAPKGGTLRL 67

Query: 63  SSFGGFDSLNPFINKGVAAENIGIIYDTLMRQSQDEPFTEYGLVAGKIEKAPDNSWVRFY 122
           S+ G FD+LNP + KG  A  + ++YDTLM+ +++E    YGL+A  +    D     F 
Sbjct: 68  STSGTFDTLNPLLAKGERATGLSLVYDTLMKSTEEELSASYGLLAEGVSYPDDIEKATFR 127

Query: 123 LRPEARFHDGHPMRADDVVFTFNALIKDGAPLYRQYYADVAEVVAEEPLKVLFKFKHKNN 182
           LR +A++ DG P+  +DVVF+F    KD +P    YY  V +        + F F  KNN
Sbjct: 128 LRQDAKWADGKPVTPEDVVFSFEKA-KDLSPQLATYYTHVTKAEVSGERDITFTFDEKNN 186

Query: 183 RELPLILGQLPVLPKHWYEN-------REFNRGNLEIPLGSGPYKVAKVKAGRSVRYERV 235
           RELP I+GQL ++PKHW+E        R+ +RG LE  +GSGPYK+A V  G SV YER 
Sbjct: 187 RELPQIVGQLLIVPKHWWEGTGPDGKPRDISRGTLEPVMGSGPYKIAAVSPGSSVTYERR 246

Query: 236 KDYWAKDLPINRGFYNFDAMTFDAYRDTTVALEALKAGAFDYGLEVSAKNWATAYNVPAV 295
            DYW KD+ +N G  NF  + +  + D  V  +A K+G  D+  E S+  W T Y+ PAV
Sbjct: 247 DDYWGKDVNVNVGMNNFKTIAYTFFADQDVEFQAFKSGTVDFRQEASSSRWVTGYDFPAV 306

Query: 296 REGRLIKEELPN--GNPTGMQGFIFNIRRPVFQDVRVRQALSLLLDYEWTNKQLFNGAYT 353
           +EGR+ KEELPN   +   MQ F+ N+RR  FQ+ ++R+AL+   D+E  N+ L  G + 
Sbjct: 307 KEGRVKKEELPNIYRSVGIMQAFVPNMRREKFQNPKLRKALNYAFDFEELNRTLAYGQFQ 366

Query: 354 RTGSYFENSEMAARGLPSPNELKILEPLRGKVPEQVFTEVFHNPVSDGSGMIREQQRQAY 413
           R  S+F  SE+A+ GLP+  EL+IL+ L+ +VP +VFT  + NPV+      R+  R+A 
Sbjct: 367 RITSFFMGSELASSGLPTGRELEILQELKDQVPPEVFTTEYRNPVAGDPAKQRDNLREAV 426

Query: 414 KLLQEAGWKIVDDKMVDAQ-GKPASIEFLLAQTEFERILLPFKRNLADLGIELNIRRVDV 472
           KL++EAG+++  ++MV+A  G+   +EFL+  +  ER +LP+ +NL  +GI   IR VD 
Sbjct: 427 KLMKEAGYELRGNRMVNAATGQQLDMEFLIDSSGMERTILPYVQNLKKIGINATIRTVDA 486

Query: 473 SQYITRLRSRDYDMIVGGYPQSNSPGNEQREFWSSAAADNPGSRNFIGLRDPAIDQLVDQ 532
           SQY  R RS D+D+ +  +  S +PGNEQ +FW SAAAD  GS N  G+++PA+D LV +
Sbjct: 487 SQYTNRTRSFDFDVTIKLWATSANPGNEQADFWGSAAADRQGSNNLAGIKNPAVDALVRK 546

Query: 533 LINADSRQSLIDHCRALDRVLLWGYYVIPNWHIKTWRVAYWNHIGHPNVSPKYDIGI-DT 591
           +I A +R   +   RALDRVLL   YVIP ++     +AYWN +  P   P+Y +G  D 
Sbjct: 547 VIFAPNRDEQVAAARALDRVLLANSYVIPQFYRGEMFIAYWNTLIRPENLPEYGVGFPDA 606

Query: 592 WW 593
           WW
Sbjct: 607 WW 608