Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 537 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

 Score = 99.0 bits (245), Expect = 5e-25
 Identities = 120/464 (25%), Positives = 183/464 (39%), Gaps = 74/464 (15%)

Query: 115 IARSVEYSEDRSWVVFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRV 174
           +A S E S D + + F LR +  WHDG P TSADVA+S   + K  HP        +  V
Sbjct: 87  LATSWETSADGTVITFRLRNDVTWHDGTPFTSADVAYSLLEVTKKVHPRGNAVFANLTAV 146

Query: 175 DILGPLRIRFVFKRAGNPLLILRLG-EMPVLPKHYWQKRDFKATTFE-PPLGSGPYRITQ 232
           D   P      F R    +     G E  +LPKH ++  +         P+G+G +   +
Sbjct: 147 DTPDPYTAVLRFSRPSPVVWAAFNGTETQILPKHLYEGTNPLTNPLNGKPIGTGAFVFKE 206

Query: 233 VQPGRRLVFERVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQA 292
              G R+V ER  NYW K      G+   +RV +   RD      A + GE         
Sbjct: 207 WVKGERIVLERNPNYWDK------GRPYLDRVVFRIIRDPASRAAALETGE--------- 251

Query: 293 KNWANGYNFPAVRRGEVIKAQIPHSIPTQTQG---------LFMNSRRAAFSDPRVRQAL 343
              A       V   +V + +    +  +T+G            N RR  F D RVRQA 
Sbjct: 252 ---AQYIPLNPVPLSDVARIKASKDLVVETRGFEGPAPMYFFDFNLRREPFGDIRVRQAF 308

Query: 344 GLMLDFEWTNRALFSSAYRRSTSYYPNSEFAASGLPTGKEWLLLAPFRDQLPAKLFSEPY 403
              L+     +AL        T +Y  ++ AA  +P+ +       F   LP       Y
Sbjct: 309 AHALN----RKAL------AETVFYGLAKPAAGPVPSYQTQF----FATDLP----QYDY 350

Query: 404 KVSHTDGRGISRQTLRQALGLLAEA-GWKLHGQRLVDSKGQQLRMELLLVNPNLERILQP 462
            ++         + L  A GL   A G +L    +  + G+  R           R  + 
Sbjct: 351 NIA-------KAEALLDAAGLKKGADGVRLRIDHIPSAYGEDYR-----------RAGEY 392

Query: 463 YVENLSSIGIDARLRTVDRAQY-KQRLDQFDFDMILMTLNQTLSP--GLEQWLYFHSSQA 519
           + + L  IG+D  LR  D   Y K    ++DFD      +    P  G+++  +   SQA
Sbjct: 393 FKQALKRIGVDVTLRNYDLPTYIKVVFTEYDFDTHSAWYSAYPDPQIGVQRRYW---SQA 449

Query: 520 ATKG--SKNYAGVKDPVVDHLLDTLLAARTRDDQVAAARALDRV 561
             KG  S N +G+ DP +D +++ +      + + A  R L R+
Sbjct: 450 IKKGTPSSNASGIADPEIDAVIERIQTEGNVEKRNADIRELQRL 493