Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 536 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

 Score = 94.4 bits (233), Expect = 1e-23
 Identities = 121/488 (24%), Positives = 193/488 (39%), Gaps = 86/488 (17%)

Query: 77  ITTPNFQQYGISELNEPLMVGTGQYDP--SGDEPTSSYGLIARSVEYSEDRSWVVFNLRP 134
           I  P  Q  G++  N  +++    YD   + D   +    +A S E + D   + F LR 
Sbjct: 39  IVVPEPQTLGLTVSNPTIVIAINVYDGLVTYDGTGAPRPQLAESYEQAPDGRSITFRLRK 98

Query: 135 EARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRVDILGPLRIRFVFKRA-GNPL 193
              WHDG P T+ADV +S   ++K  HP       ++Q  DI  P     + + A  +P+
Sbjct: 99  GVTWHDGVPFTAADVKYSILEVVKKTHPRGIGTYSQLQ--DIETPDDHTVILRLAKPSPV 156

Query: 194 L--ILRLGEMPVLPKHYWQKRDFKATTFE-PPLGSGPYRITQVQPGRRLVFERVKNYWGK 250
           +   L   E  +LPKH ++  D     +   P+G+GP+   +   G  +  ER  NYW  
Sbjct: 157 IWSALNSSETQILPKHLYEGTDPLTNPWNTKPIGTGPFIFKEWVRGSHVTLERNPNYW-- 214

Query: 251 DLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQAKNWANGYNFPAVRRGEVI 310
               + GK   +R+ + F  DA     A + GE            A       V   +V 
Sbjct: 215 ----DAGKPYLDRLTFRFVPDAGARAAALETGE------------AQYVPLSPVPLSDVE 258

Query: 311 KAQIPHSIPTQTQG---------LFMNSRRAAFSDPRVRQALGLMLDFEWTNRALFSSAY 361
           +      +  +T+G         L  N RR  F D RVR+A+ L +D +   R ++    
Sbjct: 259 RLAKRPDLVVETRGWEAVAPVFFLDFNMRRPQFQDVRVRRAIALAIDKKALARTVWYGFA 318

Query: 362 RRSTSYYP--NSEFAASGLPTGKEWLLLAPFRDQLPAKLFSEPYKVSHTDGRGISRQTLR 419
             +T   P   + FAA+GLP            D  P K                      
Sbjct: 319 EPATGPVPAFQTAFAATGLPQ----------YDYDPKK---------------------- 346

Query: 420 QALGLLAEAGWKLHGQRLVDSKGQQLRMELLLV--NPNLERILQPYVENLSSIGIDARLR 477
            A  LL EAG K          G +LR   + +    + +R  +   + L  +GI+  L 
Sbjct: 347 -AEALLDEAGLKR------GPDGVRLRFNHVSIPYGDDFKRSGEFIRQQLKKVGIEVELL 399

Query: 478 TVDRAQYKQRL-DQFDFDMILMTLNQTLSP--GLEQWLYFHSSQAATKGS--KNYAGVKD 532
             D   + +++  ++DFD +         P  G+++  +   SQ    GS   N +G  +
Sbjct: 400 NYDLPTFLRKIYTEYDFDTLNAYYAAFADPQIGVQRRFW---SQTIRPGSAWSNASGYSN 456

Query: 533 PVVDHLLD 540
           P VD LL+
Sbjct: 457 PKVDALLE 464