Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 610 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  373 bits (957), Expect = e-107
 Identities = 233/607 (38%), Positives = 319/607 (52%), Gaps = 32/607 (5%)

Query: 6   LLSLSLALSFPAAA-IVSESHGYAQFGTLKYPATFTHFDWVNPQAPKGGTLRAMAFGTFD 64
           LL L    + PA A  + ++      G    P  FT   + N  APKGG L     GTFD
Sbjct: 20  LLLLVFGATKPAVAQALDKASAITMRGKPALPPGFTSLAYANSNAPKGGRLTLSLLGTFD 79

Query: 65  TLNPYTFKGSSPITTPNFQQYGI--SELNEPLMVGTGQYDPSGDEPTSSYGLIARSVEYS 122
           +LNP+  KG+SP         G+    + E LM        S DEP + Y LIAR+V   
Sbjct: 80  SLNPFIVKGTSP---------GVLRGTVTESLMAR------SLDEPFTLYPLIARTVSTD 124

Query: 123 EDRSWVVFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRVDILGPLRI 182
           E RS+V F L P AR+ DG  +TSADV FS+  +   G P +R    ++ + +      +
Sbjct: 125 EKRSFVEFALDPAARFSDGSALTSADVLFSFALMRDMGRPNHRLYYGKITKAEAPDAHTV 184

Query: 183 RFVFKRAGNPLLILRLGEMPVLPKHYWQKRDFKATTFEPPLGSGPYRITQVQPGRRLVFE 242
           RF F    +P L L +G MPV  +    +  F+ TT  P LGSGPYR+T V  G  L  E
Sbjct: 185 RFTFAEP-DPELPLIMGLMPVFSEQATDRTRFEETTLTPLLGSGPYRVTNVNAGAALTLE 243

Query: 243 RVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQAKNWANGYNFP 302
           R  +YWG+++A NRG YNF+R++  ++RDA   FEAF+ G  D   E     W   Y+FP
Sbjct: 244 RNPDYWGRNVAFNRGLYNFDRLDTVYFRDANSEFEAFRKGLIDARFESDPGRWETAYDFP 303

Query: 303 AVRRGEVIKAQIPHSIPTQTQGLFMNSRRAAFSDPRVRQALGLMLDFEWTNRALFSSAYR 362
           AVR GEV+K  IP  IP        N+RR   +D RVRQAL  + DFEW +R+ +   YR
Sbjct: 304 AVRSGEVVKETIPTGIPKPYSAFVFNTRRPLLADIRVRQALIELFDFEWLDRSFYHGLYR 363

Query: 363 RSTSYYPNSEFAASGLPT-GKEWLLLAPFRDQLPAKLFSEPYKVSHTDGRGISRQTLRQA 421
           R+ S++  S  ++ G P   +E  LLAPF   +   + +  Y+   +DG G  R  L+ A
Sbjct: 364 RTGSFFEGSALSSIGRPADARERALLAPFPGSVVPDVLAGTYRPPVSDGTGRDRIRLKAA 423

Query: 422 LGLLAEAGWKLHGQRLVDS-KGQQLRMELLLVNPNLERILQPYVENLSSIGIDARLRTVD 480
           L LL +AG+ L    LVD+  G+   +EL++V  + ER+   +   L   GI   +R+VD
Sbjct: 424 LDLLEQAGFVLRKGALVDAGNGRPFALELMVVTRDQERLALAWQAQLKRAGITLNVRSVD 483

Query: 481 RAQYKQRLDQFDFDMILMTLNQTLSPGLEQWLYFHSSQAATKGSKNYAGVKDPVVDHLLD 540
             Q+  R   +DFDM+    +Q+LSPG EQ  YF ++ A T GS+NY G K P +D  + 
Sbjct: 484 AVQFDTRRQAYDFDMMPYAWSQSLSPGNEQAFYFGAAAADTPGSRNYMGAKAPAIDATIA 543

Query: 541 TLLAARTRDDQVAAARALDRVLSWHYYMIP------NWYLDNHRLAYRNRFAFVTTPPYT 594
            L+AAR  +  VAAARALDRVL    Y +P       W     R+A   R +   T P T
Sbjct: 544 ALIAARDEEAYVAAARALDRVLISGAYAVPLFHTPGQWLARWTRIARPERASLYGTLPET 603

Query: 595 LGLNSWW 601
                WW
Sbjct: 604 -----WW 605