Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 537 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 77.4 bits (189), Expect = 1e-18
 Identities = 105/449 (23%), Positives = 182/449 (40%), Gaps = 68/449 (15%)

Query: 106 DEPTSSYGLIARSVEYSEDRSWVVFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYR 165
           D+  +    +A S + ++D   +   LR +A +HDG+P+TSADVAFS    +K  HP + 
Sbjct: 81  DDKWNPQPYLAESWKLADDGKSLTLKLRKDALFHDGKPVTSADVAFSI-LAIKANHP-FT 138

Query: 166 TNLQEVQRVDILGPLRIRFVFKRAGNPLLILRLGE--MPVLPKH-YWQKRDFK--ATTFE 220
           T +  V++VD         V     +P ++L +     P+LPKH Y   +D K       
Sbjct: 139 TMMGPVEKVD-TPDAYTAVVRMSVPHPAIVLAMSPALCPILPKHIYGDGQDLKNHPRNTT 197

Query: 221 PPLGSGPYRITQVQPGRRLVFERVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFK 280
             +GSGPYR+T  +P +R+V ER   ++        G+   +++      D+       +
Sbjct: 198 DVIGSGPYRVTDFKPAQRVVLERFDKFF------IPGRPYLDKIIINITPDSASLMLGLE 251

Query: 281 AGEFDIY----IEHQAKNWANGYNFPAVRRGEVIKAQIPHSIPTQTQGLFMNSRRAAFSD 336
            G+  +     +    K  AN        +G        +        L  N+ +   SD
Sbjct: 252 RGDIQMVPFATLPTDLKRLANDPKMSLTPKG--------YDGIGALNWLAFNTAKKPLSD 303

Query: 337 PRVRQALGLMLDFEWTNRALFSSAYRRSTSYYPNSEFAASGLPTGKEWLLLAPFRDQLPA 396
            +VR+A+   +D  +  +AL                    G  T  +  L+A        
Sbjct: 304 VQVRKAIATAIDKNFITKALM------------------GGFATVSDGPLVA-------- 337

Query: 397 KLFSEPYKVSHTDGRGISRQTLRQALGLLAEAGWK--LHGQRLVDSKGQQLRMELLLVNP 454
              S P+ V       +    L++A  +L  AG+K    G+R       +L ++ L    
Sbjct: 338 ---SSPFAVPDLVRYPLD---LKKAGEMLDAAGYKAGAGGERF------KLTIDYLPGVD 385

Query: 455 NLERILQPYVE-NLSSIGIDARLR-TVDRAQYKQRLDQFDFDMILMTLNQTLSPGLEQWL 512
           + ++ +  Y+   L  +GI   +R + D   + +RL   DFDM + T+     P +    
Sbjct: 386 DQQKNVAEYIRGQLKKVGITVEVRASADFPAWAKRLASHDFDMSMDTVFNWGDPIIGVHR 445

Query: 513 YFHSSQAATKGSKNYAGVKDPVVDHLLDT 541
            + S+        N     +P VD LL+T
Sbjct: 446 TYLSTNIKPIVWTNTQSYANPKVDELLNT 474