Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 530 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 95.1 bits (235), Expect = 7e-24
 Identities = 120/439 (27%), Positives = 186/439 (42%), Gaps = 66/439 (15%)

Query: 114 LIARSVEYSEDRSWVVFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQR 173
           L+A +   S+D     F LR   +WHDG+  TSADVAFS  T LK  HP  R     V  
Sbjct: 81  LLATAWSQSKDGLQYTFELRKGVKWHDGKDFTSADVAFSILT-LKQVHPRGRGTFANV-- 137

Query: 174 VDILGP-LRIRFVFKRAGNPLLILRLG--EMPVLPKHYWQKRDFKATTF-EPPLGSGPYR 229
           VD+  P      +     +P L+  L   E P++PKH ++  D  +  +   P+G+GP+ 
Sbjct: 138 VDVKTPDANTAVIVLSKPSPFLLTALASTESPIVPKHLYEGTDIASNKYNSAPVGTGPFV 197

Query: 230 ITQVQPGRRLVFERVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIE 289
             +   G  ++ ER  NYW K       K   +RV   F  D+     A ++G  D+   
Sbjct: 198 FKEWVQGSHIILERNPNYWDKP------KPYLDRVVVRFVLDSAARAAALESGAADL--- 248

Query: 290 HQAKNWANGYNFPAVRR-GEVIKAQIPHSIPT---QTQGLFMNSRRAAFSDPRVRQALGL 345
               N   G     V R G++   QI   I       Q ++ N    A     VR+A+  
Sbjct: 249 ---ANGTGGIPLSDVERFGKLPGVQIDTRISPYLGSHQQIYFNLDTPALQKLEVRRAIAQ 305

Query: 346 MLDFEWTNRALFSSAYRRSTSYYPNSEFAASGLPTGKEWLLLAPFRDQLPAKLFSEPYKV 405
            +D          +A+ + T +Y     +AS  P GK    ++ + D   A +   P+  
Sbjct: 306 AIDV---------NAFAK-TVWYGYGTLSAS--PIGKG---ISRYHD---ASIQPYPFNP 347

Query: 406 SHTDGRGISRQTLRQALGLLAEAGWKLHGQRLVDSKGQQLRMELLLVNPNLERILQPYV- 464
                        ++A   L  AG+K        + G +L++  +L NP  ER    +V 
Sbjct: 348 -------------KEAEAALDAAGFKR------GAGGTRLKLR-VLYNPFQERRAADFVR 387

Query: 465 ENLSSIGIDARLRTVDRAQY--KQRLDQFDFDMILMTLNQTLSPGL-EQWLYFHSSQAAT 521
           ++L  IGIDA + + D A Y  K   D+  FD+ L +L     P +  Q +++  +    
Sbjct: 388 QSLGRIGIDATVESYDFATYVTKAYTDR-AFDITLESLTNLFDPTVGVQRVFWSKNFKVG 446

Query: 522 KGSKNYAGVKDPVVDHLLD 540
               N A   +P VD LL+
Sbjct: 447 LPFSNAAHYVNPEVDRLLE 465