Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 554 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 82.4 bits (202), Expect = 5e-20
 Identities = 79/276 (28%), Positives = 110/276 (39%), Gaps = 40/276 (14%)

Query: 114 LIARSVEYSEDRSWVVFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQR 173
           L+A + + S D     F LRP  ++HDG   T+ DV +S  T  K G P  R  L  V+R
Sbjct: 105 LLATAWQVSPDGLKYSFKLRPGVKFHDGHDFTAEDVRYSVLTQKKQG-PRGRITLANVER 163

Query: 174 VDILGPLRIRFVFKRAGNPLL-ILRLGEMPVLPKH-YWQKRDFKATTFEPPLGSGPYRIT 231
           VD   PL    V  R    LL  L   E+P++P H Y             P+G+GP+   
Sbjct: 164 VDTPDPLTAVIVLSRPAPFLLKSLSSAELPIVPAHRYSDGEPLGNPNITAPVGTGPFVFE 223

Query: 232 QVQPGRRLVFERVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQ 291
           Q   G  LV  +  NYW K      G  + +RV  +F RD      A + GE D+     
Sbjct: 224 QWVRGSHLVLRKNPNYWRK------GYPHLDRVIVKFVRDPAAISTAVETGEVDV----- 272

Query: 292 AKNWANGYNFPAVRRGEVIKAQIPHSIPTQTQGLFMNSR--------RAAFSDPRVRQAL 343
               A G     + R     A  P      T   F+N+             ++P+VR A+
Sbjct: 273 ----AQGVGLADLER----LAGNPKLKVDDTYDGFLNNASFLEFNVDNPVLANPKVRHAI 324

Query: 344 GLMLDFEWTNRALFSSAYRRSTSYYPNSEFAASGLP 379
              +D            + R+T YY   E   S +P
Sbjct: 325 AQAID----------RNFIRNTIYYKRVEVVNSPIP 350