Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 542 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 81.6 bits (200), Expect = 8e-20
 Identities = 106/434 (24%), Positives = 175/434 (40%), Gaps = 56/434 (12%)

Query: 115 IARSVEYSEDRSWVVFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRV 174
           +A +   S D     F LR   RWHDG+P TSADVA S   LLK  HP  R     V  V
Sbjct: 92  LATAWTVSADGLQYTFTLRRGVRWHDGKPFTSADVAHSI-GLLKQYHPRGRATFSSVAEV 150

Query: 175 DILGPLRIRFVFKRAGNPLL-ILRLGEMPVLPKHYWQKRDFKAT-TFEPPLGSGPYRITQ 232
                     V  +    LL  L   E P++P+H ++     A      P+G+GP+   +
Sbjct: 151 RTPDAYTAVLVLSKPVPYLLTALSASESPIVPRHLYESGKADANPANNAPIGTGPFVFKE 210

Query: 233 VQPGRRLVFERVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQA 292
              G  + +ER  +YW      +  K   +R+   F  DA     A + GE  +      
Sbjct: 211 WVRGSHVTYERNPDYW------DNPKPYVDRLIVRFIPDAAARAAAIEKGEVHL------ 258

Query: 293 KNWANGYNFPAVRRGEVIKAQIPHSIPTQTQGL-FMNSRRAAFSDPRVRQALGLMLDFEW 351
              + G   P    G+V + +   ++  +  G  ++N+                 ++F  
Sbjct: 259 ---SPGTPVPL---GDVERLRAKPNLVFEPNGYQYINNVS--------------RVEFNL 298

Query: 352 TNRALFSSAYRRSTSYYPNSEFAASGLPTGKEWLLLAPFRDQLPAKLFSEPYKVSHTDGR 411
            N AL     R++ ++  N +     +  G+  L+  P    L  K +     V   D  
Sbjct: 299 ENPALQDLRVRQAIAHAINRQVVQKTVWYGQGQLIPGPVHPAL-RKFYVPDLPVLPHD-- 355

Query: 412 GISRQTLRQALGLLAEAGWKLHGQRLVDSKGQQLRMELLLV---NPNLERILQPYVENLS 468
                 +++A  LL  AG+      +    G  LR++L +V   N   +R  +   ++L 
Sbjct: 356 ------VKRAEALLDAAGF------VRGKAGGNLRLKLAVVPISNEGGQRTAEYLKQSLG 403

Query: 469 SIGIDARLRTVDRAQYKQRL-DQFDFDMILMTLNQTLSPGLE-QWLYFHSSQAATKGSKN 526
            IGI+  + + D A Y +R+     FD+ +  ++ T  P +  Q LY+  +        N
Sbjct: 404 RIGIEVTIHSQDFATYVRRVYADRAFDLHVSVMSNTFDPTVGIQRLYWSKNFKKGLPFSN 463

Query: 527 YAGVKDPVVDHLLD 540
            +G  +P VD LL+
Sbjct: 464 GSGYSNPEVDRLLE 477