Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 73.2 bits (178), Expect = 3e-17
 Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 28/237 (11%)

Query: 122 SEDRSWVVFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRVDILGP-L 180
           S D     F LR   +WHDG+  TSADVA+S   LLK  HP  R     +  +D      
Sbjct: 88  SPDGLTYTFTLRQGVKWHDGKDFTSADVAYSIE-LLKKIHPRGRNTFANLTAIDTPDKYT 146

Query: 181 RIRFVFKRAGNPLLILRLGEMPVLPKHYWQKRD-FKATTFEPPLGSGPYRITQVQPGRRL 239
            I  + K A   +  L   E P++PKH ++  D         P+G+GP++  +   G  +
Sbjct: 147 AILRLSKPAPYLIRALVATETPIVPKHIYEGTDPANNPNNNAPIGTGPFKFKEWVRGSHI 206

Query: 240 VFERVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQAKNWANGY 299
           V+ER  +YW K       K   +++   F  D   A  AF+ G  D+           GY
Sbjct: 207 VYERNNDYWDKP------KPFVDQLIVRFVTDPAAAAVAFETGTVDL-----------GY 249

Query: 300 NFPAVRRGEVIKAQIP--------HSIPTQTQGLFMNSRRAAFSDPRVRQALGLMLD 348
             P          ++P        +S  +    L  N     F + +VRQA+   +D
Sbjct: 250 RTPVPLADLERLKKVPALRFETKGNSYSSNVTRLEFNLDNEYFKNEKVRQAVAHAID 306