Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 604 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  410 bits (1053), Expect = e-118
 Identities = 241/600 (40%), Positives = 334/600 (55%), Gaps = 31/600 (5%)

Query: 24  SHGYAQFGTLKYPATFTHFDWVNPQAPKGGTLRAMA---FGTFDTLNPYTFKGSSPITTP 80
           +HGYA +  LKY   F  FD+V+P APKGG LR ++     TFD  NP+T KGS+P    
Sbjct: 19  AHGYALWDDLKYGPDFKAFDYVDPAAPKGGELRLVSNLRVSTFDKYNPFTIKGSAPA--- 75

Query: 81  NFQQYGISELNEPLMVGTGQYDPSGDEPTSSYGLIARSVEYSEDRSWVVFNLRPEARWHD 140
               Y  S L + L+ G      S DE  S YGL+A  V  + DR  V F LRPEAR+H+
Sbjct: 76  ----YLDSLLFDTLLTG------SMDETASGYGLLAEDVTVAPDRRSVTFRLRPEARFHN 125

Query: 141 GQPITSADVAFSYRTLLKD-GHPIYRTNLQEVQRVDILGPLRIRFVFKRAGNPLLILRLG 199
           G P+ +ADV  SY TL+     P Y+T LQEV   D++    IRF FK     L ++ +G
Sbjct: 126 GMPVEAADVKHSYDTLIGPYTSPGYKTLLQEVDGADVIDARTIRFRFKTPNRELPLI-VG 184

Query: 200 EMPVLPKHYWQKRDFKATTFEP-----PLGSGPYRITQVQPGRRLVFERVKNYWGKDLAV 254
            +P+  +  W   + KA  F+      P+GSG Y+I  V+ G+ + + R   YW +DL V
Sbjct: 185 SLPIFSRA-WGVENGKAKPFDQVVMDIPIGSGAYKIGPVRFGKDITYVRDPGYWARDLPV 243

Query: 255 NRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQAKNWANGYNFPAVRRGEVIKAQI 314
           NRG +NF+R+  + Y+D T   EA KAGEFD+   + A +WA   N      GE++K + 
Sbjct: 244 NRGSHNFDRITVKIYKDNTARLEALKAGEFDMMSFYSAGDWARRVNGKRFNTGELVKREF 303

Query: 315 PHSIPTQTQGLFMNSRRAAFSDPRVRQALGLMLDFEWTNRALFSSAYRRSTSYYPNSEFA 374
            H  P   Q   +NSRR    DPRVR+ALGL LD+EW NR +F   Y R T  + N++  
Sbjct: 304 QHKKPAGFQSFVLNSRRDKLKDPRVREALGLALDYEWMNRQMFYGGYPRVTDLFGNTDCE 363

Query: 375 ASGLPTGKEWLLLAPFRDQLPAKLFSEPYKVSHTDGRGIS-RQTLRQALGLLAEAGWKLH 433
           A GLP+ +E  LL P+R ++P   F   Y    T+G G S R  LR+A  LL EAGW+  
Sbjct: 364 AKGLPSPEEKALLEPWRGKIPDASFGPMYTPPTTEGEGHSLRNNLRRARDLLKEAGWEYR 423

Query: 434 GQRLVDSKGQQLRMELLLVNPNLERILQPYVENLSSIGIDARLRTVDRAQYKQRLDQFDF 493
              L ++KG+++ +E L       R + P+V NL  +GI     TVD A Y++RLD+FDF
Sbjct: 424 DGALRNAKGERMTLEYLDSKEGGVRTVSPWVRNLEKLGITLNFATVDFALYQERLDRFDF 483

Query: 494 DMILMTLNQTLSPGLEQWLYFHSSQAATKGSKNYAGVKDPVVDHLLDTLLAARTRDDQVA 553
           D+  +    T +PG      F S  A T+ S NY GV  P +D LL  ++ A T+ + + 
Sbjct: 484 DITTINFPGTNNPGQSLLEIFGSKAAKTESSGNYMGVSTPAIDALLKDIVDADTKAELMP 543

Query: 554 AARALDRVLSWHYYMIPNWYLDNHRLAYRN-RFAFVT-TPPYTLG----LNSWWIKTSEK 607
           A RALDRV+   +Y+IP W L +HR+ Y + R +F +  PPY  G    + +WW K   K
Sbjct: 544 ACRALDRVIMHSHYLIPQWTLTSHRIVYDDWRLSFKSPMPPYAGGEDWVMGTWWAKQPPK 603