Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 642 a.a., putative ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

 Score =  411 bits (1056), Expect = e-119
 Identities = 237/587 (40%), Positives = 325/587 (55%), Gaps = 26/587 (4%)

Query: 24  SHGYAQFGTL-KYPATFTHFDWVNPQAPKGGTLR--AMAFGTFDTLNPYTFKGSSPITTP 80
           +H    +G   +Y A+F HFD+VNP APKGG LR  A+  G FD + PY  KG       
Sbjct: 53  THALTVYGEAPRYAASFRHFDYVNPSAPKGGILRRSAIEIGQFDHILPYIDKG------- 105

Query: 81  NFQQYGISELNEPLMVGTGQYDP----SGDEPTSSYGLIARSVEYSEDRSWVVFNLRPEA 136
                G+SE++  L      Y P    S DEP + YGLIAR +E   +  W+ F++ P A
Sbjct: 106 ----IGVSEVDGLL------YAPLAVRSYDEPYTVYGLIARRMERGPNDEWLRFDIDPRA 155

Query: 137 RWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRVDILGPLRIRFVFKRAGNPLLIL 196
            + DG+P+ + DV F++  L+  G   YRT   +V RV +     +RF  K      L L
Sbjct: 156 TFADGRPVRAEDVRFTFDLLMSKGSLKYRTQFADVARVTVERLHSVRFDLKPEHGRTLAL 215

Query: 197 RLGEMPVLPKHYWQKRDF-KATTFEPPLGSGPYRITQVQPGRRLVFERVKNYWGKDLAVN 255
            L  +PV+P+H  Q+RDF     F+ P+GSGPYRI ++  GR + FER   +W +DL  +
Sbjct: 216 DLASLPVMPEHDLQQRDFANGAGFDKPVGSGPYRIGRIDNGRSITFERDPAWWARDLPAS 275

Query: 256 RGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQAKNWANGYNFPAVRRGEVIKAQIP 315
           RG+YNF+++  E++ D  VA +  K G +D   E  A  +  GYN   +  G + +A + 
Sbjct: 276 RGRYNFDKLRIEYFGDTEVARQVLKGGGYDYNREFSATAYTLGYNGAQLDDGRLQRAHLG 335

Query: 316 HSIPTQTQGLFMNSRRAAFSDPRVRQALGLMLDFEWTNRALFSSAYRRSTSYYPNSEFAA 375
            + P   QG   N  +  F D RVRQALG++ DFEW+NR +  + Y R  S + N+  AA
Sbjct: 336 PAKPQVAQGFVFNLDQPQFKDRRVRQALGMLWDFEWSNRQMMRNLYIRQQSVFSNTPLAA 395

Query: 376 SGLPTGKEWLLLAPFRDQLPAKLFSEPYKVSHTDGRGISRQTLRQALGLLAEAGWKLHGQ 435
             LP   E  LLAP R Q+P ++F+  +    TDG GI RQ   QAL LL +AGW   G 
Sbjct: 396 RQLPDAGELKLLAPLRGQVPDEVFTTVFTAPVTDGSGIIRQQQLQALALLEQAGWHPEGD 455

Query: 436 RLVDSKGQQLRMELLLVNPNLERILQPYVENLSSIGIDARLRTVDRAQYKQRLDQFDFDM 495
           RLV+S+G  L    L     LER+L P+  NL+ IG+   +R VD AQY  RL   D+DM
Sbjct: 456 RLVNSQGTPLAFTFLNGQAGLERLLLPWKRNLAQIGVTLNIRNVDSAQYVNRLMARDYDM 515

Query: 496 ILMTLNQTLSPGLEQWLYFHSSQAATKGSKNYAGVKDPVVDHLLDTLLAARTRDDQVAAA 555
           I+     TLSPG E + YF S+ A   GS N   ++DP VDHL+D L+ A T+ D +  A
Sbjct: 516 IVTGYPVTLSPGAELYNYFGSAAAHDPGSNNLMVLQDPAVDHLIDGLVRADTQADMLRHA 575

Query: 556 RALDRVLSWHYYMIPNWYLDNHRLAYRNRFAF-VTTPPYTLGLNSWW 601
            ALDRVL W+YY IPN+Y       + NRF        Y  GL++WW
Sbjct: 576 HALDRVLQWNYYWIPNYYPPGSSTVWWNRFGLPKVQATYDEGLDTWW 622