Pairwise Alignments

Query, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

Subject, 603 a.a., ABC transporter substrate-binding protein from Dickeya dianthicola ME23

 Score =  405 bits (1040), Expect = e-117
 Identities = 227/613 (37%), Positives = 334/613 (54%), Gaps = 27/613 (4%)

Query: 3   RPLLLSLSLALSFPAAA--IVSESHGYAQFGTLKYPATFTHFDWVNPQAPKGGTLRAMAF 60
           R ++ +L  A ++ A A     +++ +A  G  KYP  FTH+ + NP APKGG     A 
Sbjct: 4   RAIIATLLSACAWLADAEPTAQQTYAFATLGEPKYPQGFTHYGYTNPSAPKGGKATLSAL 63

Query: 61  GTFDTLNPYTFKGSSPITTPNFQQYGISELNEPLMVGTGQYDPSGDEPTSSYGLIARSVE 120
           GTFD  N +  +G +   T +                   Y  S DEP S Y LIA +  
Sbjct: 64  GTFDNFNRFALRGLAAARTESLYD--------------ALYVSSEDEPASYYPLIALTAR 109

Query: 121 YSEDRSWVVFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRVDILGPL 180
           Y+ D SW+   + P AR+HDG PIT+ADVAF++   +  G P +R   +  + V  + P 
Sbjct: 110 YASDYSWIDVEMNPAARFHDGSPITAADVAFTFNMFMTQGVPQFRLYYKGAE-VKAMTPH 168

Query: 181 RIRFVFKRAGNPLLILRLGEMPVLPKHYWQKRDFKATTFEPPLGSGPYRITQVQPGRRLV 240
            +RF F       ++  L  +PV+P+ +W          +PPL SGPYRIT  + G+ ++
Sbjct: 169 TVRFTFPDPDKEKMLGML-TLPVMPEKFWHDHKLSDPLNKPPLASGPYRITDYRMGQYVI 227

Query: 241 FERVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQAKNWANGYN 300
           + RV +YW  DL VNRG+YNF+++ Y++Y D +VA EAFKAG FD+ IE   K+WA  Y 
Sbjct: 228 YSRVADYWAADLPVNRGRYNFDQLRYDYYLDDSVALEAFKAGAFDLRIEGSPKHWATQYE 287

Query: 301 FPAVRRGEVIKAQIPHSIPTQTQGLFMNSRRAAFSDPRVRQALGLMLDFEWTNRALFSSA 360
                RG + K    +     T+ L  N +R  FSD RVRQAL L  DF W N+ LF ++
Sbjct: 288 GGNFARGYIRKKDETNQAAQDTRWLVFNIQRPQFSDRRVRQALALAFDFNWMNKTLFFNS 347

Query: 361 YRRSTSYYPNSEFAASGLPTGKEWLLLAPFRDQLPAKLFSEPYKVSHTDGRGISRQTLRQ 420
           Y+R +S++ N+E+AA G+P+ +E   L P +D++PA +F   Y+   +D  G  R  L  
Sbjct: 348 YQRPSSFFQNTEYAAQGMPSAEELAWLTPLKDKIPADVFGPAYRPESSDASGYDRTGLLN 407

Query: 421 ALGLLAEAGWKLHGQRLVDSK-GQQLRMELLLVNPNLERILQPYVENLSSIGIDARLRTV 479
           AL LL +AGW+L  Q LV+ + GQ  R ELLL +      + P+  +L+ +GI   +R+V
Sbjct: 408 ALQLLQQAGWELKNQVLVNKQTGQPFRFELLLPSAANSIYVLPFQHSLARLGIRMEVRSV 467

Query: 480 DRAQYKQRLDQFDFDMILMTLNQTLSPGLEQWLYFHSSQAATKGSKNYAGVKDPVVDHLL 539
           D  Q+  R  + DFDMI         P  +  L    S      S N  GV+D  +D L+
Sbjct: 468 DSPQFNNRFRKRDFDMIPKLYPAMPYPSSD--LAISWSSGYINSSYNSPGVQDAAIDQLI 525

Query: 540 DTLLAARTRDDQ---VAAARALDRVLSWHYYMIPNWYLDNHRLAYRNRFAF-VTTPPYTL 595
           D ++  R + D+   ++   ALDRVL+W+ + IP W+ ++ R AY N+FA   T P YTL
Sbjct: 526 DNII--RHQGDKPALLSLGPALDRVLTWNQFAIPMWFSNHDRFAYWNKFAMPATRPAYTL 583

Query: 596 GLNSWWIKTSEKA 608
           G++SWW    + A
Sbjct: 584 GIDSWWYDAEKAA 596