Pairwise Alignments

Query, 476 a.a., Membrane-bound lytic murein transglycosylase D from Pseudomonas putida KT2440

Subject, 1017 a.a., hypothetical protein from Acinetobacter radioresistens SK82

 Score =  253 bits (647), Expect = 2e-71
 Identities = 131/284 (46%), Positives = 183/284 (64%), Gaps = 6/284 (2%)

Query: 71  DVWERMRQGFALQDSIDVNPRIEQQRLWFASNPTFIESAGERGSLYLHYIVERLEERDMP 130
           DVW+RM  GF + D    + RIE QR WF S   +++    R S YL++ V+  E R +P
Sbjct: 87  DVWKRMTVGFKM-DLNHWDSRIEAQRSWFISRQPYLDRLSARASRYLYHTVKEAERRGLP 145

Query: 131 LELALLPAIESAYNPMAYSRASAAGMWQFMPATGRHFNLRQTNFYDGRRDVTASTNAALD 190
            ELALLP IES+Y+P A S A+AAG+WQF+P+TG+ + L+QT+ YDGRRDV  ST AA +
Sbjct: 146 TELALLPVIESSYDPAATSSAAAAGLWQFIPSTGKIYGLKQTSLYDGRRDVVESTRAAYE 205

Query: 191 YLTRLHDMFNGDWLLALAAYNAGEGTVSRAIERNERLGLPTDYWNLPLPQETRDYVPKLL 250
           +L  L++ F G W LALAAYNAG G + +AI RN   GLPTDYW+L LPQET +YVP+ L
Sbjct: 206 FLGSLYNQF-GSWELALAAYNAGPGRIQQAINRNRAAGLPTDYWSLKLPQETMNYVPRFL 264

Query: 251 ALSQVVSTPEAYGVNLTPIANEPYFEAVAINDRLDLSRVAAFANIDEDELIQLNPAFK-K 309
           A++Q++  P AYGV+L PIAN P+F  V +N  + L++V++   +   EL  LNP  + +
Sbjct: 265 AVAQIIKNPSAYGVSLPPIANRPHFREVNLNGGVGLNQVSSITGLSRAELYALNPGHRGE 324

Query: 310 RMTVDGPKQLLVPTAKAQLLSASLSNLNPEQ---LVSLQPPKAA 350
            +    P ++L+P   +  +   L +LN        S QPP A+
Sbjct: 325 YVDPASPMRILIPADLSPAIDTKLRSLNSGSGGLWASNQPPVAS 368



 Score = 53.9 bits (128), Expect = 3e-11
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 361 PVGARS-YRVKRGDNLSAIAKANRVSVKDIKRWNRLSGN-SLRAGQVLALRGGSAPSAAG 418
           P G RS Y V+ GD L+ IA  N VS +D+ +WN++  + +L  G  L L   +      
Sbjct: 573 PKGKRSTYTVQPGDTLAVIAMKNGVSWRDVAKWNQIDPSATLYVGTSLYLYDANPQKVEE 632

Query: 419 NRVAASGKRSTQYKVRKGDSLYLVAKRFNVEMKHLKRWN 457
             V AS  +   Y V+  DSL  VA +F + +K L  WN
Sbjct: 633 KTVKAS--KPETYLVKANDSLTSVADQFGLSLKQLADWN 669



 Score = 48.5 bits (114), Expect = 1e-09
 Identities = 32/107 (29%), Positives = 60/107 (56%), Gaps = 15/107 (14%)

Query: 366 SYRVKRGDNLSAIAKANRVSVKDIKRWNRL-SGNSLRAGQVLALRGGSAPSAAGNRVAAS 424
           SY+V+RGD L++IA  ++VSV ++ + N + +G+ +R GQ L             +V A 
Sbjct: 793 SYKVQRGDTLTSIAAQSKVSVSELAQLNNINTGSGVRIGQTL-------------KVPAG 839

Query: 425 GKRSTQYKVRKGDSLYLVAKRFNVEMKHLKRWNPRSGHA-LKPGQTL 470
                +Y V+ GD+L  VA ++++++  L   N  + ++ L+ GQ +
Sbjct: 840 ASMPDEYIVQPGDTLTSVAGKYHLQVNFLAGLNGLNRNSGLRVGQKI 886



 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 10/117 (8%)

Query: 366 SYRVKRGDNLSAIAKANRVSVKDIKRWNRLSGNS-LRAGQVLALRG------GSAPSAAG 418
           +Y VK  D+L+++A    +S+K +  WN LS  S L  GQ L L+             A 
Sbjct: 642 TYLVKANDSLTSVADQFGLSLKQLADWNNLSVTSGLFVGQKLQLKDNPNAAVAKPVKVAD 701

Query: 419 NRVAASGKRSTQ-YKVRKGDSLYLVAKRFNVEMKHLKRWNP--RSGHALKPGQTLTV 472
            RV A  +  T+ Y V++G+ L ++A+R+ +  + L    P   +  +L  GQ + V
Sbjct: 702 TRVTAEQRIKTKSYTVKRGEYLKMIAERYALSNQELADLTPGLTATSSLLVGQRINV 758



 Score = 43.1 bits (100), Expect = 4e-08
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 19/155 (12%)

Query: 337 NPEQLVSLQPPKAAFARAVAEAKAPVGARSYRVKRGDNLSAIAKANRVSVKDIKRWNR-- 394
           NP   V+ +P K A  R  AE +  +  +SY VKRG+ L  IA+   +S +++       
Sbjct: 688 NPNAAVA-KPVKVADTRVTAEQR--IKTKSYTVKRGEYLKMIAERYALSNQELADLTPGL 744

Query: 395 LSGNSLRAGQVLALRGGSAPSAA-------------GNRVAASGKRSTQYKVRKGDSLYL 441
            + +SL  GQ + +       +A              N   ++  ++  YKV++GD+L  
Sbjct: 745 TATSSLLVGQRINVPVEETSVSAKVETKEDKKTTLNDNIKVSTNYKTESYKVQRGDTLTS 804

Query: 442 VAKRFNVEMKHLKRWNP-RSGHALKPGQTLTVYLG 475
           +A +  V +  L + N   +G  ++ GQTL V  G
Sbjct: 805 IAAQSKVSVSELAQLNNINTGSGVRIGQTLKVPAG 839



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 55/271 (20%), Positives = 98/271 (36%), Gaps = 46/271 (16%)

Query: 216 TVSRAIERNERLGLPTDYWNLPLPQETRDYVPKLLALSQVVSTPEAYGVNLTPIANEPYF 275
           T + ++   +R+ +P +  ++    ET++   K   L+  +     Y      +      
Sbjct: 745 TATSSLLVGQRINVPVEETSVSAKVETKE--DKKTTLNDNIKVSTNYKTESYKVQRGDTL 802

Query: 276 EAVAINDRLDLSRVAAFANIDEDELIQLNPAFKKRMTVDGPKQLLVP--------TAKAQ 327
            ++A   ++ +S +A   NI+    +++    K       P + +V           K  
Sbjct: 803 TSIAAQSKVSVSELAQLNNINTGSGVRIGQTLKVPAGASMPDEYIVQPGDTLTSVAGKYH 862

Query: 328 LLSASLSNLNP-----------------EQLVSLQPPKAAFARAVAEAKAPVGARS---- 366
           L    L+ LN                  E  VS  P +     A        G+      
Sbjct: 863 LQVNFLAGLNGLNRNSGLRVGQKIKLDGELPVSPAPVEKETVTAKNSKNNSSGSHRDTER 922

Query: 367 YRVKRGDNLSAIAKANRVSVKDIKRWNRLSGNSLRAGQVLALRGGSAPSAAGNRVAASGK 426
           Y VK G++L+ IA    +SVK++   N L     RAG    LRG +             K
Sbjct: 923 YTVKNGESLNTIASRVGISVKELAELNNLES---RAG---LLRGQN---------LLIPK 967

Query: 427 RSTQYKVRKGDSLYLVAKRFNVEMKHLKRWN 457
             T Y V++GD+L  +A ++ +    L   N
Sbjct: 968 TVTSYTVKRGDTLIGLANKYGMNTSELAEMN 998



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 361  PVGARSYRVKRGDNLSAIAKANRVSVKDIKRWNRLS-GNSLRAGQVL 406
            P    SY VKRGD L  +A    ++  ++   N +     LR G+V+
Sbjct: 966  PKTVTSYTVKRGDTLIGLANKYGMNTSELAEMNDIQPSTQLRIGEVI 1012