Pairwise Alignments

Query, 460 a.a., gamma-aminobutyrate permease from Pseudomonas putida KT2440

Subject, 469 a.a., GABA permease from Pseudomonas simiae WCS417

 Score =  500 bits (1288), Expect = e-146
 Identities = 253/448 (56%), Positives = 320/448 (71%), Gaps = 1/448 (0%)

Query: 6   NKKQRSLQHGLTSRQVSMISIAGIIGAGLFIGSSNAIATAGPAILISYAMTGLLVLLVMR 65
           N     L  G   R V+M+SIAGIIGAGLF+GS +AIA AGPA+L++Y  +G LV+LVMR
Sbjct: 7   NDSNGQLAQGFKPRHVTMLSIAGIIGAGLFVGSGHAIAAAGPAVLLAYLFSGTLVVLVMR 66

Query: 66  MLGEMAIANPNSGSFSTYASEAIGPWAGFTIGWLYWWFWVLIIPVEAIAGADILHAYFPG 125
           MLGEMA+ANP++GSFSTYA +AIG WAGFTIGWLYWWFWVL+IP+EA+A   IL+ +FP 
Sbjct: 67  MLGEMAVANPDTGSFSTYADQAIGRWAGFTIGWLYWWFWVLVIPIEALAAGHILNQWFPQ 126

Query: 126 VPSWLFAFLIMLVLSGTNLVSVKNFGAFEYWFALVKVVAIIGFIGVCTLAVFGFWPLAEV 185
           + +WLFA L + +L  TNL SV  +G FE+WFA+ KV+AII FIG+    + G+ P  EV
Sbjct: 127 IDAWLFALLSIFLLVVTNLFSVSKYGEFEFWFAMAKVIAIIAFIGLGFAVLMGWIPEREV 186

Query: 186 SGVSRLWDS-GGFMPNGFGTVLGGVLITIFSFFGAEIVTIAADETANPKDKIRRATNLVV 244
           SG+SRL +  GGF PNG   V+G  +  +FSF G E VTIAA E++NP   I RAT  V+
Sbjct: 187 SGLSRLMEEHGGFAPNGLSAVVGAFITIMFSFIGTEAVTIAAAESSNPAQNIARATRSVM 246

Query: 245 YRIAIFYLASIFLVVSLVAWNDPGLKAVGSFQRVLEVLNVPGAKLLVDLVVLVAVTSCMN 304
           +RI +FYL SIF+V+S+V WNDP L +VGS+QR LE++N+P AKLLVD+VVL+AV SCMN
Sbjct: 247 WRIGVFYLLSIFVVISVVPWNDPLLASVGSYQRALELMNIPHAKLLVDVVVLIAVASCMN 306

Query: 305 SGLYTASRMLYSLGARGQALSVTKRISGSGVPTVAVIFSTLAGFAGCFVNYVFPGKVFGF 364
           S +Y ASRML+SLG RG A ++ K+ S + VP  AVI ST+ G      +Y  P  +F F
Sbjct: 307 SSIYIASRMLFSLGKRGDAPALMKKTSAASVPRAAVIASTILGAGVTLFSYFAPAGLFQF 366

Query: 365 LLSTTGAIALLVYLVIAVSQLRMRARAEREGRPLELKMWLFPWLTWLVIGTIVMVLGYML 424
           LL+++GAIALLVYLVIAVSQLRMR    +    L  +MWLFPWLTWLVI  I   L  ML
Sbjct: 367 LLASSGAIALLVYLVIAVSQLRMRKILRQRNVTLTFQMWLFPWLTWLVIAFICAALTVML 426

Query: 425 FSDAYRYETLMTAGVTAFILLVSLTQRR 452
            +  +R+E   T G+   I LV L   R
Sbjct: 427 VTPEHRFEVSSTIGLALVISLVGLLTAR 454