Pairwise Alignments

Query, 1530 a.a., putative RHS family protein from Pseudomonas putida KT2440

Subject, 1464 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score = 1031 bits (2667), Expect = 0.0
 Identities = 607/1444 (42%), Positives = 810/1444 (56%), Gaps = 139/1444 (9%)

Query: 1    MAQTVHAARMGDAILHPSLAAEMISAVAEAVIYAAATAAVAAAISLAVVGTVATGGAAGV 60
            M+  + AARMGDA+ H S+ A+++  V E     A TA   AA++ AV  T+AT G  G 
Sbjct: 1    MSDALWAARMGDALTHTSMMADILGGVLEVAANVAITALATAAVAAAVGVTIATAGIGGC 60

Query: 61   AIAAVAGVAVGAVSTLSVGEDQTVGDAISSFCDSLGNSVDSPDPYGKIESGSTNVLINSE 120
             + AV G+ VG   +   G D+     +S  C+S  N++  P     I  GST+  +NS 
Sbjct: 61   ILGAVVGIVVGMAMS-KTGADK----GLSKMCESFANALFPPVVEATIAVGSTDTFVNSI 115

Query: 121  PAARAAGITGPPGGGAADTEQEE------PSILENVGSMAMAAVPYLVPFVGLGMAIRDI 174
            PAARAAG   P     A TE E+      P      G + MA   +             +
Sbjct: 116  PAARAAGSI-PSHVAPAGTELEQVPPEPDPEPRPEPGFLDMAEGFF-----------SQL 163

Query: 175  FNPPVTTPANPGSEPAEGDKISCSRHPPLPDTFIAQGSDKVFINGQPAARSGDKTTCDAT 234
            + P V TPA PG  PA  D + C+RHPP+P   +A+GSDKV INGQPA RSGD++ CDAT
Sbjct: 164  WRPTVATPA-PGVVPALTDMVLCARHPPMPPQLLAEGSDKVTINGQPAVRSGDRSMCDAT 222

Query: 235  IDVNENVSPNVRIGGGTATVRDIRNGKSK--------IAMFTG------------IIAGM 274
            +  +  +SPNV IGGGT  V++IR+GK+         + M  G            ++AG+
Sbjct: 223  VVSSGLISPNVTIGGGTVVVQEIRSGKTPGVGLAIEALMMLKGAKGKTLSNLPCMLLAGV 282

Query: 275  L---ISRRFGRIKGCTLG--NPVAVATGSKLQEGPEDIDFNLPGLLAIQWARRYDSRDMR 329
                +S+  G     T+G  NPV  ATG+K+  G  ++DF LPG+L I W R Y+SRD R
Sbjct: 283  TSYAVSQAMGAAANATMGSPNPVHAATGAKVLGGETELDFVLPGILPIDWQRFYNSRDER 342

Query: 330  SDGLLGMGWSVPYEVELARVPHPQGGTLWIYIDNDGNRLELGRLSAGDAFISAVDGLAFF 389
              G+ G GWSVPYE+ +  + HP GG   +Y D  G R+ LG +S G A  S  +GL+  
Sbjct: 343  RTGMFGAGWSVPYEISVEILLHPDGGEELLYTDEQGRRINLGGISLGSAMFSPGEGLSIR 402

Query: 390  QLEDGQTVVEDINEGLYRVFDTDPLNPKRSRLIRLGDRNLNCLDLLYDEQGRLKALYDKY 449
            +  +GQ ++E   +G+YR+F++ P N    RL +LGDRN + + L YD  GRL  L+D  
Sbjct: 403  RHRNGQLLIESA-DGIYRLFESTPANVSLLRLTQLGDRNDHRIHLNYDAAGRLVQLHDNL 461

Query: 450  GQTVVQLHYAARHPQRVSEVSRVFLKNGGTPTVERSELLVSYRYTDNGQLHEVLDATDQR 509
                V+L    R    VS++ RV+         +R E+LVSY Y   G L EV DAT Q 
Sbjct: 462  DLVQVEL---IRDQGHVSKIERVYPD-------QRREVLVSYSYNATGDLTEVRDATGQI 511

Query: 510  VRRFTYTPEGYLNSHQLASGAVREYEWARFAIPETRPTPKRLDGTPYRLPPLLEPQPDHE 569
             RRF+Y     +  HQL +G    YEWA                       L+E   D E
Sbjct: 512  QRRFSYDAGRRMVEHQLPAGLRCFYEWA-----------------------LVE---DVE 545

Query: 570  WRVIRHWGSDGEEYRFEYNLEAGETLVTDNLGRRDHYYWGPLYEVYKHIDPQGNCWLAEV 629
            WRV  HW  +G+ Y FEY+L AG T +TD + R    +W   +++ K+ D  G  WL + 
Sbjct: 546  WRVSHHWTDEGDAYHFEYDLSAGVTRITDGMQRISIRHWNNQHQITKYSDNLGQTWLFDW 605

Query: 630  I-AGQLIKRIDPQGGEWRYSYDDIGRLIETRDPLGRSEHIKYLRHWALPIQVTDTAGRTR 688
                QL+   DPQGG + YSYD+ G LI   DPLGR +   +L HWALP+  T+ A  + 
Sbjct: 606  NDERQLLGATDPQGGRFEYSYDETGNLISEIDPLGRRDSTMWLEHWALPLVETNPANHSW 665

Query: 689  QYGYDSHGNLLWQQDPLGRETQYQYDPEGRVTQVTDALEKSKYLSWNTCGQLLSYRDCSN 748
             Y YD  GN +   DP+G  T+Y+YD  G   ++ DA  KSK L W+  GQL+ + DCS 
Sbjct: 666  HYQYDQRGNCIAATDPMGHITRYRYDSHGHPVEIIDATGKSKKLRWSPFGQLVEHIDCSG 725

Query: 749  AQTLYHYDAHGRLRESINARGEHTHFRYDARGYLVESERPDGRIDRYEIDVAGQLTRYID 808
              T + YD  G L+   +A GE T F +DARG L+ S+ PDGR ++Y  D +G L  Y D
Sbjct: 726  YSTRFGYDERGFLQFITDALGERTQFSHDARGRLISSQLPDGRTEQYTRDTSGLLLGYTD 785

Query: 809  PAQKTLQFRYDPSGRLVERTDAMGYSVKFRYDAYGRLLQLTNENDESYRFGWDELDRLVA 868
            PA  T  ++++  G++ +RTDA G  VKF YD+YGRL  L NEN+ESY+F WD  DRL  
Sbjct: 786  PAGHTTLYQHNRRGQVCQRTDAYGRRVKFAYDSYGRLKALINENEESYQFVWDAGDRLTE 845

Query: 869  QKDLDGSGRLYAYNVLDEVIRLTHVPSPDEQPPLSDNAPPTRTTAIRHDFERDAIGRLVS 928
            Q+DLDGS + Y Y++L+ +  +T VP+  +   ++    P+    I H  ERDA+GRL++
Sbjct: 846  QRDLDGSAKRYTYDLLNHMTAMTAVPAHFDNTLVNAAETPS---PIVHRMERDAVGRLIA 902

Query: 929  KRTEDGTTDYRYDAADNLLSITFTDNKGEKQQLDYTYDANGQLLSETNSAGLLQYRYDEL 988
            K T+DG T+Y YD+ D L ++TFTD  G+ Q L + Y   G+LL+E +  G LQ+ YDEL
Sbjct: 903  KMTDDGRTEYVYDSLDQLCAVTFTDLSGDTQVLSFAYAPLGRLLTEQSPMGTLQHHYDEL 962

Query: 989  GNLQTLVLPDQRELNHLYYGSGHLHQINLNGRVISDFERDAVHDEVLRTQGKLVTRTRYD 1048
            GNL    LPD R LN LYYGSGHLHQINL+G VISDFERD +H EVLRTQG+L TR+ YD
Sbjct: 963  GNLTQTQLPDGRWLNRLYYGSGHLHQINLDGEVISDFERDRLHREVLRTQGQLSTRSEYD 1022

Query: 1049 TSGRLAGKAIHYRDAPAEVLPLLDKAYRYDASDNLIAEVLTQ--TQRRGMSNAANDENAN 1106
             SGRL  +   +   P      + + + YD +DNL  ++  Q  TQ+R            
Sbjct: 1023 RSGRLRSRHCRHSHQPMLTPAAMQQHFEYDPADNLTGKLDQQPTTQQR------------ 1070

Query: 1107 LEQIIGRFLDLPHTGK-TYSGHNRYGYDLNEQLQTVHQSRPNWQATQVEDFKYDKAGNLF 1165
                  + L    TG+ T S  N  G                    Q E F YD A NL 
Sbjct: 1071 ------QLLHYDATGRITASQDNLLG--------------------QRETFTYDAAANLL 1104

Query: 1166 DGPKLN-GLIKHNRVLVYQDKRYRYDRFGRLCEKRIGSNWVQYFEYDAEQRLVCVEQYRS 1224
            D P    GL+ HN+++ YQDKRYRYD FGR+ EKR  S  VQ F YDAE RL+   + R+
Sbjct: 1105 DSPHPGAGLVVHNKLMTYQDKRYRYDGFGRMIEKRSTSRGVQRFAYDAESRLI---EVRN 1161

Query: 1225 GERERVVFAYDPLGRRISKEVYQRD-YPEPRRRVLFHWQGFRLLQEVQSGLASLYVYATV 1283
                 V   YDPLGRRI K  +  D YP    R  F W G RLLQE +    SLYVY   
Sbjct: 1162 ENGNVVKMHYDPLGRRIKKTEHGIDGYPLSETR--FSWDGLRLLQEHKYSQTSLYVYEN- 1218

Query: 1284 ESYDPLARVDGKPGSEAIHYFHTTLVGQPEQLTDSDGNTIWRSDHHGWGKIINEWHSQQN 1343
            E Y+PLARVDG    + + Y+H  L G P QL+++DG+ +W++ +  WG  + E      
Sbjct: 1219 EGYEPLARVDGIGQLQKLRYYHNDLNGLPAQLSEADGHIVWQATYRVWGNTLEEVREPHY 1278

Query: 1344 GREQNLRNQGQYIDRETGLHFNIFRFYDPDIGRFTTTDPLGIEGGVNLYSYAPNIVNYSD 1403
              EQNLR QGQY+DRETGLH+N FRFYDPDIGRFT+ DP+ + GG+NLY Y  N  ++ D
Sbjct: 1279 IEEQNLRFQGQYLDRETGLHYNTFRFYDPDIGRFTSPDPISLMGGLNLYLYGFNPFSWVD 1338

Query: 1404 PLGL 1407
            PLGL
Sbjct: 1339 PLGL 1342