Pairwise Alignments

Query, 1530 a.a., putative RHS family protein from Pseudomonas putida KT2440

Subject, 1572 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  327 bits (837), Expect = 8e-93
 Identities = 310/1159 (26%), Positives = 480/1159 (41%), Gaps = 180/1159 (15%)

Query: 284  KGCTLGNPVAVATGSKLQEGPEDIDFNLPGLLAIQWARRYDSRDMRSDGLLGMGWSVPYE 343
            K  T G PV++ TG +L       D  L GLL  +W+R Y +  + +D  LG GWS    
Sbjct: 421  KTATNGCPVSMVTGEELLTLT---DGTLDGLLPFEWSRLYRTSAVETDCGLGFGWSHSLA 477

Query: 344  VELARVPHPQGGTLWIYIDNDGNRLELGRLSAGDAFISAVDGLAFFQLEDGQTVVEDINE 403
                R+       +W   +N    L L   S      S  +   +      + V+     
Sbjct: 478  ---HRLSVSGDAVVWTDHENRSTTLPLPTASRPAITNSLAEAAIYLGAVPDELVLSQ-GS 533

Query: 404  GLYRVFDTDPLNPKRSRLIRLGDRNLNCLDLLYDEQGRLKALYDKYGQTVVQLHYAARHP 463
              Y   D          L  + D   N L +  D  GR++ L +  G+++   + ++R  
Sbjct: 534  RFYHFRD--------GALTAISDAYDNRLRICRDFLGRIERLDNGVGRSLFLRYASSRIV 585

Query: 464  QRVSEVSRVFLKNGGTPTVERSELLVSYRYTDNGQLHEVLDATDQRVRRFTYTPEGYLNS 523
                ++ R    + G       + +V+Y Y D+G+L    +A  +    + Y  +  +  
Sbjct: 586  AVDYQIERAV--DDGPFVWVTEQTVVAYAYDDSGRLISATNAVGES-EVYRYDDQHVILE 642

Query: 524  HQLASGAVREYEWARFAIPETRPTPKRLDGTPYRLPPLLEPQPDHEWRVIRHWGSDGE-E 582
              LA GA   + W R                                R +RHW S  + +
Sbjct: 643  RGLAGGASFFWAWERAGKAA---------------------------RCVRHWASFSQMD 675

Query: 583  YRFEYNLEAGETLVTDNLGRRDHYYWGPLYEVYKHIDPQGNCWLAEVIAGQLIKRIDPQG 642
             R+ ++ + G+  V +  G +         EVY H            +  +L +R+DP G
Sbjct: 676  TRYAWD-DNGQVTVFNAAGSQ---------EVYVHD-----------LRARLGQRVDPDG 714

Query: 643  GEWRYSYDDIGRLIETRDPLGRSEHIKYLRHWALP------------------IQVTDTA 684
             +   SYDD GRL   + PLG      Y     L                   ++V    
Sbjct: 715  AQHFKSYDDPGRLTVEQAPLGAITAYPYDEAGRLVALFPGDDAPTTYEHDNGFVRVVRRG 774

Query: 685  GRTRQYGYDSHGNLLWQQDPLGRETQYQYDPEGRVTQVTDALEKSKYLSWNTCGQLLSYR 744
                +Y  ++ G++  + DP G  T Y Y+  G++  V         L+WN  GQLL  +
Sbjct: 775  QAVWKYERNNQGDVTRKTDPDGNATDYSYNKYGQLVGVWYPDHSCHRLTWNERGQLLEEQ 834

Query: 745  DCSNAQTLYHYDAHGRLRESINARGEHTHFRYDARGYLVESERPDGRIDRYEIDVAGQLT 804
              +     Y YD  GR     +A+G  T +++D+ G L+    P G    Y  +  G++T
Sbjct: 835  LPNGVIKRYCYDDLGRQVAREDAQGALTQYQWDSVGRLIRVVLPGGATREYSYNAYGKIT 894

Query: 805  RYIDPAQKTLQFRYDPSGRLVERT-DAMGYSVKFRYDAYGRLL-QLTNENDESYRFGWDE 862
               +      ++ Y     L+ R  +A G  VK+RYD    LL ++ NE  E+YR  +  
Sbjct: 895  SERNELGHVTRYEYADGLHLISRRINADGTQVKYRYDNVRLLLTEIENEVGETYRLQYHS 954

Query: 863  LDRLVAQKDLDGSGRLYAYNVLDEVIRLTHVPSPDEQPPLSDNAPPTRTTAIRHDFERDA 922
                  +   DG    YAY++   +          E+    D+     T      +ERD 
Sbjct: 955  NGLTQQEIGFDGQRSAYAYDLNGNL---------QEKTEHGDDGSQLVTR-----YERDH 1000

Query: 923  IGRLVSKRTEDGT-TDYRYDAADNLLSITFTDNKGEKQQLDYTYDANGQLLSETNSAGLL 981
             GRLV K   DG+  DY YD   NLLS+     +     L Y YD+  +L +E    G L
Sbjct: 1001 AGRLVRKTLPDGSLVDYAYDRQGNLLSV-----ENGHWALAYEYDSQNRLTAEHQGWGTL 1055

Query: 982  QYRYDELGNLQTLVLPDQRELNHLYYGSGHLHQINLNGRVISDFERDAVHDEVLRTQGKL 1041
            +Y YD   NLQTL LPD   +   +   G L ++ +NG+ ++    D   +   R QGKL
Sbjct: 1056 RYGYDACDNLQTLRLPDNNRVTFNHAKGGLLEKVEVNGQTLTAHLFDTGREHQ-RGQGKL 1114

Query: 1042 VTRTRYDTSGRLAGKAIHYRDAPAEVLPLLDKAYRYDASDNLIAEVLTQTQRRGMSNAAN 1101
            ++  +YD  GRL    +   +       +  + Y YD   NL                  
Sbjct: 1115 LSSYQYDAQGRLFNHGLCNVEGA-----IYQRQYHYDTCGNLT----------------- 1152

Query: 1102 DENANLEQIIGRFLDLPHTGKTYSGHNRYGYDLNEQLQTVHQSRPNWQATQVEDFKYDKA 1161
                       R LD      T  G + Y YD   +L     S+      + E F +D A
Sbjct: 1153 -----------RRLD------TRKGEHHYHYDALSRLIRADHSQG-----EQERFAHDPA 1190

Query: 1162 GNLF----DGPKLNGLIKHNRVLVYQDKRYRYDRFGRLCEKRIGSNW--VQYFEYDAEQR 1215
            GNL      GP +   +  NR+++  D  Y YD FG L  +R G     V  + YD + R
Sbjct: 1191 GNLLMQNRPGPDI---VAGNRLMIQGDHHYDYDAFGNLIRERRGKGHTLVTEYRYDCQHR 1247

Query: 1216 LVCVEQYRSGERERVVFAYDPLGRRISKEVYQRDYPEPRRRVLFHWQGFRLLQEVQSGLA 1275
            L+ +++      +   + YDP GRRISK V             F WQG  L+ E  +   
Sbjct: 1248 LIGIKKPNG---QTASYRYDPFGRRISKTV-------DGITTEFFWQGDTLIAEHHANRH 1297

Query: 1276 SLYVYATVESYDPLARVDG-KPGSEAIHYFHTTLVGQPEQLTDSDGNTIWRSDHHGWGKI 1334
              Y+Y   +++ PLA ++G  P     +++    +G P++LT+ DG  +W + +  +G+I
Sbjct: 1298 RSYLYEP-DTFRPLALLEGFGPKETKAYHYQLDHLGTPQELTNPDGEIVWSAHYRAYGEI 1356

Query: 1335 INEWHSQQNGREQN-LRNQGQYIDRETGLHFNIFRFYDPDIGRFTTTDPLGIEGGVNLYS 1393
                     G+  N LR QGQY D+E+GLH+N  R+Y+PDIGR+ T DP+ + GG+N Y 
Sbjct: 1357 TRV----DIGKVDNPLRFQGQYFDQESGLHYNRHRYYNPDIGRYLTPDPVKLAGGINTYQ 1412

Query: 1394 YAPNIVNYSDPLGL--CPE 1410
            Y PN   + DPLGL  CPE
Sbjct: 1413 YVPNPTGWIDPLGLSNCPE 1431