Pairwise Alignments
Query, 1530 a.a., putative RHS family protein from Pseudomonas putida KT2440
Subject, 1410 a.a., type IV secretion protein Rhs from Escherichia coli ECRC101
Score = 262 bits (670), Expect = 2e-73
Identities = 283/1028 (27%), Positives = 421/1028 (40%), Gaps = 202/1028 (19%)
Query: 488 LVSYRYTDNGQLHEVLDATDQRVRRFTYTPE--GYLNSHQLASGAVREYEWARFAIPETR 545
L Y YT +G+L V D + +VR F Y E G + +H A PE+R
Sbjct: 320 LARYTYTASGELRAVYDRSGTQVRGFAYDAEHAGRMVAHHYAGR------------PESR 367
Query: 546 PTPKRLDGTPYRLPPLLEPQPDHEWRVIRHWGSDGEEYRFEYNLEAGETLVTDNLGRRDH 605
R D T R+ L+ P+ G +YRFEY + +TD+L RR+
Sbjct: 368 ---YRYDDTG-RVTELVNPE--------------GLDYRFEYGQD--RVTITDSLNRREV 407
Query: 606 YYWGPLYEVYKHIDPQGNCWLAEVIAGQLIKRIDPQGGEWRYSYDDIGRLIETRDPLGRS 665
Y +G L V+ K+ G R YD+ GRL D GR
Sbjct: 408 LY------------TEGEGGLKRVV-----KKEHADGSITRSEYDEAGRLKAQTDAAGR- 449
Query: 666 EHIKYLRHWA--LPIQVTDTAGRTRQYGYDSHGNLLWQQDPLGRETQYQYDPEGRV---- 719
+Y H A VT GRT +YGY+S + P G + +YD +GR+
Sbjct: 450 -RTEYSLHMASGAVTAVTGPDGRTVRYGYNSQRQVTSVTYPDGLRSSREYDEKGRLAAET 508
Query: 720 -------------------TQVTDALEKSKYLSWNTCGQLLSYRDCSNAQTLYHYDAHGR 760
T + DA +K ++W+ GQLL++ DCS T Y YD +G+
Sbjct: 509 SRSGETTRYSYDDPASELPTGIQDATGSTKQMAWSRYGQLLTFTDCSGYTTRYEYDRYGQ 568
Query: 761 LRESINARGEHTHFRYDARGYLVESERPDGRIDRYEIDVAGQLTRYIDPAQKTLQFRYDP 820
G T+ Y+ RG LV + GR RYE AG LT + P + +YD
Sbjct: 569 QIAVHREEGISTYSSYNPRGQLVSQKDAQGRETRYEYSAAGDLTAIVAPDGSRSEIQYDA 628
Query: 821 SGRLVERTDAMGYSVKFRYDAYGRLLQLTNENDESYRFGWDELDRLVAQKDLDGSGRLYA 880
G+ V T G + YDA GR+ LTNEN F +D +DRL Q+ DG + Y
Sbjct: 629 WGKAVSTTQG-GLTRSMGYDAAGRITVLTNENGSQSTFRYDPVDRLTEQRGFDGRTQRYH 687
Query: 881 YNVLDEVIRLTHVPSPDEQPPLSDNAPPTRTTAIRHDFERDAIGRLVSKRTE-DGTTDYR 939
Y++ ++ + S DE + + DA R+ + D ++
Sbjct: 688 YDLTGKLTQ-----SEDE--------------GLVTLWHYDASDRITHRTVNGDPAEQWQ 728
Query: 940 YDAADNLLSITFTDNKGEKQQLDYTYDANGQLLSETNSAGLLQ-----------YRYDEL 988
YD L +++ T ++G + + Y YD G+L E + + + Y E
Sbjct: 729 YDEHGWLTTLSHT-SEGHRVSVHYGYDDKGRLTGERQTVENPETGEMLWEHETGHAYSEQ 787
Query: 989 GNLQTLVLPDQRE-LNHLYYGSGHLHQINLNGRVISDFERDAVHDEVLRTQG--KLVTRT 1045
G L T PD + L YGSG+L + L G + ++ RD +H E R+ G T
Sbjct: 788 G-LATRQEPDGLPPVEWLTYGSGYLAGMKLGGTPLVEYMRDRLHRETARSFGGEAYELAT 846
Query: 1046 RYDTSGRLAGKAIHYRDAPAEVLPLLDKAYRYDASDNLIAEVLTQTQRR------GMSNA 1099
++TSG+L + ++ LP LD+ Y ++ + LI Q R G
Sbjct: 847 AWNTSGQLRSRHLN--------LPQLDRDYDWNDNGQLIRISGPQESREYRYSDTGRLTG 898
Query: 1100 ANDENANLEQIIGRFLD-----LP----HTGKTYSG----------HNRYGYD----LNE 1136
+ ANL+ I D LP H T + H Y YD L E
Sbjct: 899 VHTTAANLDIDIPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYIYRYDEYGRLAE 958
Query: 1137 QLQTVHQSRPNWQATQVEDFKYDKAGNLFDGPKLNGLIKHNRVLVYQDKRYRYDRFGRLC 1196
+ + + + + YD L + I+H V + RY YD GR
Sbjct: 959 KTDRIPEGVIRMHDERTHHYHYDSQHRLV----FHTRIQHGEPQV--ESRYLYDPLGRRT 1012
Query: 1197 EKRIG------SNWVQ--------YFEYDAEQRLVCVEQYRSGERERVVF---AYDPLGR 1239
KR+ + W+ ++ +D + RL V+ ++ R + V+ ++ PL R
Sbjct: 1013 GKRVWRRERDLTGWMSLSRKPEETWYGWDGD-RLTTVQTQQT--RIQTVYQPGSFTPLLR 1069
Query: 1240 -------------RISKEVYQRDYPEPRRRVLFHWQGFRLLQEVQSGLAS-------LYV 1279
R EV Q D L G RL +E++ G S
Sbjct: 1070 IETENGEQAKARHRSLAEVLQEDTGVTLPAELAVMLG-RLERELRQGSVSEESQQWLAQC 1128
Query: 1280 YATVESYDPLARVDGKPGSEAIHYFHTTLVGQPEQLTDSDGNTIWRSDHHGWGKIINEWH 1339
T E + P +H +H G P+ L +G T W+ ++ WG ++ E
Sbjct: 1129 GLTAEQMAAQLEAEYIP-ERKLHLYHCDHRGLPQALISPEGETAWQGEYDEWGNLLGETS 1187
Query: 1340 SQQNGREQNLRNQGQYIDRETGLHFNIFRFYDPDIGRFTTTDPLGIEGGVNLYSYAPNIV 1399
+Q +Q R GQ D E+GL++N R+YDP GR+ T DP+ I+GG NLYSYA N V
Sbjct: 1188 AQH--LQQPYRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIDIKGGWNLYSYALNPV 1245
Query: 1400 NYSDPLGL 1407
++ DPLGL
Sbjct: 1246 SWIDPLGL 1253
Score = 169 bits (428), Expect = 2e-45
Identities = 231/899 (25%), Positives = 343/899 (38%), Gaps = 179/899 (19%)
Query: 436 YDEQGRLKALYDKYGQTVVQLHYAARHPQRVSEVSRVFLKNGGTPTVERSELLVSYRYTD 495
Y G L+A+YD+ G V Y A H R+ V G P YRY D
Sbjct: 325 YTASGELRAVYDRSGTQVRGFAYDAEHAGRM-----VAHHYAGRPESR-------YRYDD 372
Query: 496 NGQLHEVLDATDQRVRRFTYTPEGYLNSHQLASGAVREYEWARFAIPETRPTPKRLDGTP 555
G++ E+++ PEG +Y RF + R T + +
Sbjct: 373 TGRVTELVN------------PEGL------------DY---RFEYGQDRVT---ITDSL 402
Query: 556 YRLPPLLEPQPDHEWRVIRHWGSDGEEYRFEYNLEAGETLV-TDNLGRRDHYYWGPLYEV 614
R L RV++ +DG R EY+ EAG TD GRR Y
Sbjct: 403 NRREVLYTEGEGGLKRVVKKEHADGSITRSEYD-EAGRLKAQTDAAGRRTEYSLHMASGA 461
Query: 615 YKHI-DPQGNCWLAEVIAGQLIKRID-PQGGEWRYSYDDIGRLIETRDPLGRSEHIKYLR 672
+ P G + + + + P G YD+ GRL G + Y
Sbjct: 462 VTAVTGPDGRTVRYGYNSQRQVTSVTYPDGLRSSREYDEKGRLAAETSRSGETTRYSYDD 521
Query: 673 HWA-LPIQVTDTAGRTRQYGYDSHGNLLWQQDPLGRETQYQYDPEGRVTQVTDALEKSKY 731
+ LP + D G T+Q + +G LL D G T+Y+YD G+ V S Y
Sbjct: 522 PASELPTGIQDATGSTKQMAWSRYGQLLTFTDCSGYTTRYEYDRYGQQIAVHREEGISTY 581
Query: 732 LSWNTCGQLLSYRDCSNAQTLYHYDAHGRLRESINARGEHTHFRYDARGYLVESERPDGR 791
S+N GQL+S +D +T Y Y A G L + G + +YDA G V + +
Sbjct: 582 SSYNPRGQLVSQKDAQGRETRYEYSAAGDLTAIVAPDGSRSEIQYDAWGKAVSTTQ---- 637
Query: 792 IDRYEIDVAGQLTRYIDPAQKTLQFRYDPSGRLVERTDAMGYSVKFRYDAYGRLLQLTNE 851
G LTR YD +GR+ T+ G FRYD RL +
Sbjct: 638 ---------GGLTR---------SMGYDAAGRITVLTNENGSQSTFRYDPVDRLTEQRGF 679
Query: 852 NDESYRFGWDELDRLVAQKDLDGSGRLYAYNVLDEVIRLTHVPSPDEQPPLSDNAPPTRT 911
+ + R+ +D +L +D +G L+ Y+ D + T P EQ ++
Sbjct: 680 DGRTQRYHYDLTGKLTQSED-EGLVTLWHYDASDRITHRTVNGDPAEQWQYDEHG---WL 735
Query: 912 TAIRHDFERDAIGRLVSKRTEDGTTDYRYDAADNLLSITFTDNKGEKQQLDYTYDANGQL 971
T + H E G VS Y YD L GE+Q ++ G++
Sbjct: 736 TTLSHTSE----GHRVS-------VHYGYDDKGRL--------TGERQTVE--NPETGEM 774
Query: 972 LSETNSAGLLQYRYDELGNLQTLVLPD-QRELNHLYYGSGHLHQINLNGRVISDFERDAV 1030
L E + + Y E G L T PD + L YGSG+L + L G + ++ RD +
Sbjct: 775 LWEHETG----HAYSEQG-LATRQEPDGLPPVEWLTYGSGYLAGMKLGGTPLVEYMRDRL 829
Query: 1031 HDEVLRTQG--KLVTRTRYDTSGRLAGKAIHYRDAPAEVLPLLDKAYRYDASDNLIAEVL 1088
H E R+ G T ++TSG+L + ++ LP LD+ Y ++ + LI
Sbjct: 830 HRETARSFGGEAYELATAWNTSGQLRSRHLN--------LPQLDRDYDWNDNGQLIRISG 881
Query: 1089 TQTQRRGMSNAANDENANLEQIIGRFLDLPHTGKTYSGHNRYGYDLNEQLQTVHQSRPNW 1148
Q R Y Y +L VH + N
Sbjct: 882 PQESR-----------------------------------EYRYSDTGRLTGVHTTAANL 906
Query: 1149 QATQVEDFKY--DKAGNLFDGPKLN-----GLIKHNRVLVYQDKRYRYDRFGRLCEK--- 1198
D Y D AGN P+L+ NR+ YRYD +GRL EK
Sbjct: 907 DI----DIPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYIYRYDEYGRLAEKTDR 962
Query: 1199 ------RIGSNWVQYFEYDAEQRLVCVEQYRSGERE-RVVFAYDPLGRRISKEVYQRD-- 1249
R+ ++ YD++ RLV + + GE + + YDPLGRR K V++R+
Sbjct: 963 IPEGVIRMHDERTHHYHYDSQHRLVFHTRIQHGEPQVESRYLYDPLGRRTGKRVWRRERD 1022
Query: 1250 ------YPEPRRRVLFHWQGFRL--LQEVQSGLASLYVYATVESYDPLARVDGKPGSEA 1300
+ W G RL +Q Q+ + ++Y S+ PL R++ + G +A
Sbjct: 1023 LTGWMSLSRKPEETWYGWDGDRLTTVQTQQTRIQTVY---QPGSFTPLLRIETENGEQA 1078
Score = 42.4 bits (98), Expect = 4e-07
Identities = 116/552 (21%), Positives = 180/552 (32%), Gaps = 149/552 (26%)
Query: 873 DGSGRLYAYNVLDEVIRLTHVPSPDEQPPLSDNAPPTRTTAIRHDFERDAIGRLVSKRTE 932
DG+GR + + VL + V LS A P R A LV T
Sbjct: 239 DGAGRRF-HLVLTTQAQRAEVFRKQRATSLSSPAGP-----------RSASSSLVFPDTL 286
Query: 933 DGTTDYRYDAADNLLSITFTDNKGEKQQLD------YTYDANGQLLSETNSAGLL----- 981
T+Y D L ++ T + +L YTY A+G+L + + +G
Sbjct: 287 PAGTEYGADNGIRLEAVWLTHDPAYPDELPAAPLARYTYTASGELRAVYDRSGTQVRGFA 346
Query: 982 --------------------QYRYDELGNLQTLVLPDQRELNHLYYGSGHLHQINLNGRV 1021
+YRYD+ G + LV P+ + Y +LN R
Sbjct: 347 YDAEHAGRMVAHHYAGRPESRYRYDDTGRVTELVNPEGLDYRFEYGQDRVTITDSLNRRE 406
Query: 1022 ISDFERDAVHDEVLRTQGK--LVTRTRYDTSGRLA------------------------- 1054
+ E + V++ + +TR+ YD +GRL
Sbjct: 407 VLYTEGEGGLKRVVKKEHADGSITRSEYDEAGRLKAQTDAAGRRTEYSLHMASGAVTAVT 466
Query: 1055 ---GKAIHY-----RDAPAEVLPL-LDKAYRYDASDNLIAEVLT--QTQRRGMSNAANDE 1103
G+ + Y R + P L + YD L AE +T R + A++
Sbjct: 467 GPDGRTVRYGYNSQRQVTSVTYPDGLRSSREYDEKGRLAAETSRSGETTRYSYDDPASEL 526
Query: 1104 NANLEQIIGRFLDLPH-------TGKTYSGHN-RYGYDLNEQLQTVHQSR---------P 1146
++ G + T SG+ RY YD Q VH+ P
Sbjct: 527 PTGIQDATGSTKQMAWSRYGQLLTFTDCSGYTTRYEYDRYGQQIAVHREEGISTYSSYNP 586
Query: 1147 NWQATQVED-------FKYDKAGNLFDGPKLNGLIKHNRVLVYQDKRYRYDRFGRLCEKR 1199
Q +D ++Y AG+L +G +YD +G+
Sbjct: 587 RGQLVSQKDAQGRETRYEYSAAGDLTAIVAPDG----------SRSEIQYDAWGKAVSTT 636
Query: 1200 IGSNWVQYFEYDAEQRLVCVEQYRSGERERVVFAYDPLGRRISKEVYQRDYPEPRRRVLF 1259
G + YDA R+ + + F YDP+ R QR + +R +
Sbjct: 637 QGG-LTRSMGYDAAGRITVLTNENGSQS---TFRYDPVDRLTE----QRGFDGRTQRYHY 688
Query: 1260 HWQGFRLLQEVQSGLASLYVYATVESYDPLARVDGKPGSEAIHYFHTTLVGQPEQLTDSD 1319
G +L Q GL +L+ YD R+ H T+ G P +
Sbjct: 689 DLTG-KLTQSEDEGLVTLW------HYDASDRIT-----------HRTVNGDPAEQ---- 726
Query: 1320 GNTIWRSDHHGW 1331
W+ D HGW
Sbjct: 727 ----WQYDEHGW 734