Pairwise Alignments

Query, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 646 a.a., type VI secretion protein ImpA from Pseudomonas simiae WCS417

 Score =  326 bits (835), Expect = 3e-93
 Identities = 206/612 (33%), Positives = 313/612 (51%), Gaps = 32/612 (5%)

Query: 28  ETLNQPFVLNLELVSYESDIDFGHVLDKPALFTLYSADRPLRHVHGLVSAFSQGETGFCR 87
           E L + F   L+L S +++ID   +L KP    L  AD   RH HG+V+  SQ       
Sbjct: 30  EELGRLFNYELQLTSLDANIDLNQLLGKPMSVGLQLADGGERHFHGIVARCSQNIDQGQF 89

Query: 88  TRYHAVVEPQLARARLRSNWRIFQQKTVPQILELMFKRQGITRFELKSSAQHQVREFCVQ 147
             Y   + P L      S+ RIFQ  ++PQI++ +F+  G + FE   S  ++  E+CVQ
Sbjct: 90  ASYQVTLRPWLWLLSRTSDCRIFQNLSIPQIIKQVFRDLGFSDFEDALSRPYREWEYCVQ 149

Query: 148 AGETDLDFIHRLAAEEGFVYRFEHCARQHTLIVTDRLLSFGLLSRGALKAEDDEALWLDE 207
             ET  DF+ RL  +EG  Y F H   +H L++ D                   A     
Sbjct: 150 YRETSFDFVSRLMEQEGIYYFFRHEQDRHVLVLAD-------------------AYGAHT 190

Query: 208 DDVGPDKVLYHASSGGDQARACLRRLRYCEQVRTARQVQRDYTFTNPAYRQEHKAQTSGV 267
              G   + Y+      + R  +       +V+       DY F  P+   + ++     
Sbjct: 191 TVPGYASIPYYPKDEQQRERDHMHNWHLAHEVQPGSMELNDYDFQRPSASIDVRSAMPR- 249

Query: 268 THQSLDYERFDYPGRYKRDAVGKPFTETRLTALRHDACLAEVQGDDVRLQTGLSFTLVGH 327
            H + DY  +DYPG Y +   G+ +  TR+ AL+      E  G+   L +G  F+L G 
Sbjct: 250 PHTAGDYPLYDYPGTYVQSEDGEHYARTRIEALQTLHEQIEFNGNARGLGSGHLFSLTGF 309

Query: 328 PREDLNVHWRVISLCHEGTQLTSLQE--EAAGAEQGTRYVNDALLVQGMAEWRP-APMAK 384
            R+D N  + ++     G +   +QE  E+ G     ++ +    +     +RP A   +
Sbjct: 310 SRQDQNREYLIV-----GCRYYIVQESLESGGGSGSAQFESSLTCIDAQQSFRPLANTHR 364

Query: 385 PRIDGPHMATVVGPPGEEIYCDEWGRVKVSFPWDRESKNNEFSSCWVWVSQGWAGGSWGS 444
           P + GP  A VVGP GEEI+ D++GRVKV F WDR  ++NE SSCW+ VSQ WAG +WGS
Sbjct: 365 PIVKGPQTALVVGPKGEEIWTDQYGRVKVHFYWDRHDQSNENSSCWIRVSQSWAGKNWGS 424

Query: 445 MAIPRIGQDVIVQYVNGDPDQPMITGRTYCGDQLPPYDLPDHKTRMTIKSQTHKGD---G 501
           M IPRIGQ+VIV ++ GDPD+P+ITGR Y  +Q  PYDLP++ T+  +KS++ KG     
Sbjct: 425 MQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYDLPENATQSGMKSRSSKGGSPAN 484

Query: 502 FNELRFEDELGRQEVFIHAERDQNNVVKHNETTLIGNDRSERVEHDEVVDIGGNRSVKVG 561
           FNE+R ED+ G ++++IHAER+Q+ VV+ +E+  +G+DR++ + H+E V IG NR   V 
Sbjct: 485 FNEIRMEDKKGLEQLYIHAERNQDIVVEVDESHSVGHDRNKSIGHNETVTIGNNRLRIVK 544

Query: 562 ASKRETVALGKVESIGLGKSLAVGGALSVMVGLEATEQVALDKRVQVGGQLRVDADEDVS 621
                +V   K +SI     + VG  L ++ G    E  A  +    G Q+   A  D  
Sbjct: 545 QEDILSVGQKKTDSISQSYVIEVGENLRLVCGESILELNASGQINLTGVQISFYASGDAE 604

Query: 622 ITSHHGHVHIDS 633
             +  G +H+++
Sbjct: 605 FNT-GGVLHLNN 615