Pairwise Alignments

Query, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  322 bits (826), Expect = 3e-92
 Identities = 217/593 (36%), Positives = 302/593 (50%), Gaps = 48/593 (8%)

Query: 17  TEFEVVSFKLDETLNQPFVLNLELVSYESDIDFGHVLDKPALFTLYSADRPLRHVHGLVS 76
           +EF+V  F   E+++QP+  ++ELVS + D+D   +L +         D   R VHGLV 
Sbjct: 19  SEFKVFEFSGIESISQPYRFDIELVSEQPDLDLESLLHRQVYLGF---DDRGRGVHGLVY 75

Query: 77  AFSQGETGFCRTRYHAVVEPQLARARLRSNWRIFQQKTVPQILELMFKRQGITR--FELK 134
             +QG++G   TRY   + PQLA     S+ RIFQ KTVPQI+  + + QGI R  FE +
Sbjct: 76  RMAQGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVPQIVAQVLEGQGIQRDRFEFR 135

Query: 135 SSAQHQVREFCVQAGETDLDFIHRLAAEEGFVYRFEHCARQHTLIVTDRLLSFGLLSRGA 194
            S  +  RE+CVQ GETDL FI RL AE G  Y F+H +  H L+       FG      
Sbjct: 136 LSGTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSAGHLLV-------FG------ 182

Query: 195 LKAEDDEALWLDEDDVGPDKVLYHASSGGDQARACLRRLRYCEQVRTARQVQRDYTFTNP 254
               DD+ +++  D   P    Y   SG       ++R     Q RT     RDY F  P
Sbjct: 183 ----DDQTVFVQADPPTP----YTPGSGMVADTPVIKRFAVQVQARTTGVNLRDYDFRKP 234

Query: 255 AYRQEHKAQTSGVTHQSLD-YERFDYPGRYKRDAVGKPFTETRLTALRHDACLAEVQGDD 313
           +   E     S VT + L   E   YPG +   A GK   +  L   R D  +A   GD+
Sbjct: 235 SLALE-----SEVTGEQLPPLEAQVYPGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDE 289

Query: 314 VRLQTGLSFTLVGHPREDLNVHWRVISLCHEGTQLTSLQE---EAAGAEQGTRYVNDALL 370
             L +G    L GHPRED N  W V  + HEG Q   L+E   E AG +    Y N+   
Sbjct: 290 PALGSGRFLKLAGHPREDWNDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQGYRNEFSA 349

Query: 371 VQGMAEWRPAPMAKPR--IDGPHMATVVGPPGEEIYCDEWGRVKVSFPWDRESKNNEFSS 428
               A +RP    +PR  I G   A V GP   EI+CDE+GRVKV   WDR+ ++N+ SS
Sbjct: 350 TPWDAIFRPPMPEQPRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSS 409

Query: 429 CWVWVSQGWAGGSWGSMAIPRIGQDVIVQYVNGDPDQPMITGRTYCGDQLPPYDLPDHKT 488
           CW+ V+ GWA   +GS+ IPR+G +V+V +VNGD D P++ G         P DLP  KT
Sbjct: 410 CWLRVASGWAHDRYGSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKT 469

Query: 489 RMTIKSQTHK-GDGFNELRFEDELGRQEVFIHAERDQNNVVKHNETTLIGNDRSERVEHD 547
           R   +SQ+   G G+NELR ED  G +E+++ A+RD    V H+    +  +    ++ +
Sbjct: 470 RSVFRSQSSPGGGGYNELRIEDRKGAEEIYLRAQRDWTQHVLHDLRVNVDGESHHELQGE 529

Query: 548 EVVDIGGNR--------SVKVGASKRETVALGKVESIGLGKSLAVGGALSVMV 592
           E+    GNR         + VG S++  V  G+   IG G+S+ + G  +V +
Sbjct: 530 ELRITHGNRLTDLKQDDHLMVGGSRQ--VRAGQTIQIGAGQSVVIEGGATVTI 580