Pairwise Alignments

Query, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  281 bits (719), Expect = 8e-80
 Identities = 207/678 (30%), Positives = 314/678 (46%), Gaps = 66/678 (9%)

Query: 18  EFEVVSFKLDETLNQPFVLNLELVSYESDIDFGHVLDKPALFTLYSADRPLRHVHGLVSA 77
           + +V++FK  E L+QPF +++++VS    +D   +L +PA      AD  L   HG V A
Sbjct: 20  DLQVLAFKGSEVLDQPFFIHIQVVSENPSLDLEALLHQPAYLAFGEADDGL---HGQVYA 76

Query: 78  FSQGETGFCRTRYHAVVEPQLARARLRSNWRIFQQKTVPQILELMFKRQGITR----FEL 133
             + + G   TRYH  + P+LA    R + RIFQQ++VPQI+  + ++ GI      FEL
Sbjct: 77  IGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQHGILADAYAFEL 136

Query: 134 KSSAQHQVREFCVQAGETDLDFIHRLAAEEGFVYRFEHCARQHTLIVTDRLLSFGLLSRG 193
                +  R FCVQ  E+DL FI RL  EEG  Y F H    H L+  D    F  L   
Sbjct: 137 -GPVVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDDQTVFPRLP-- 193

Query: 194 ALKAEDDEALWLDEDDVGPDKVLYHASSGGDQARA-CLRRLRYCEQVRTARQVQRDYTFT 252
                                V  +++ GG  A    ++R      +R+ + V+RDY F 
Sbjct: 194 ---------------------VQCYSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFE 232

Query: 253 NPAYRQEHKAQTSGVTHQSLDYERFDYPGRYKRDAVGKPFTETRLTALRHDACLAEVQGD 312
           +P+    H   ++G    +L  E + YP  +     GK      L   + D   A  + D
Sbjct: 233 HPSV---HLHDSAGAA-STLPLEDYQYPAGFTAHTRGKQLARRSLELHQRDRYRALGKSD 288

Query: 313 DVRLQTGLSFTLVGHPREDLNVHWRVISLCHEGTQLTSLQEEAAGAEQGTRYVNDALLVQ 372
              L++G    +  HP    N  W + S+ HEG Q   L+E     +    Y N      
Sbjct: 289 QPVLRSGHFLEIRDHPDPSCNDLWLITSVRHEGYQPQVLEEATPATDVFQGYRNRFTATP 348

Query: 373 GMAEWRPAPM-AKPRIDGPHMATVVGPPGEEIYCDEWGRVKVSFPWDRESKNNEFSSCWV 431
             A  RP+    KP I+G   ATV GP GE+++CD +GRVKV F WDR  + ++ SSCW+
Sbjct: 349 WQAVHRPSLRHTKPTINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWL 408

Query: 432 WVSQGWAGGSWGSMAIPRIGQDVIVQYVNGDPDQPMITGRTYCGDQLPPYDLPDHKTRMT 491
            V+ GWAG  +G+  IPR+G +V+V +++GDPD+P+I G        P Y LP HKTR  
Sbjct: 409 RVASGWAGDGFGATMIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSV 468

Query: 492 IKSQTH-KGDGFNELRFEDELGRQEVFIHAERDQNNVVKHNETTLIGNDRSERVEHDEVV 550
           ++S +   G+G NEL  ED  G + V++ A+R                D  +R+ HD  +
Sbjct: 469 LRSSSSLGGEGSNELYLEDRRGEELVYLRAQR----------------DLEQRIGHDSRL 512

Query: 551 DIGGNRSVKVGASKRETVALGKVESIGLGKSLAVGGALSVMVGLEATEQVALDKRVQVGG 610
           ++ G R        +E +       +   +   V G   V++       V  D R  V  
Sbjct: 513 EVAGER--------QEVIHGISTTHLKSEEHRQVTGDRKVLLKASDYLDVHGDSRTHVAQ 564

Query: 611 QLRVDADEDVSITSHHGHVHIDSRTSLTLSCGGAFIKLSDGRIEIGCPEPLLLHAIAQV- 669
            L ++A + + + S    V ID+   L+L  GG  + +  G   I    P+ L   A V 
Sbjct: 565 TLVIEAGQQLHLKSGASLV-IDAGAELSLKAGGEHLVIQAG--GIFSSRPIALGGSASVT 621

Query: 670 KAPARYGVPPAPEQDEIE 687
           +    + V   PE  +++
Sbjct: 622 QLAGAFRVAGMPEVSKVQ 639