Pairwise Alignments

Query, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 791 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  213 bits (541), Expect = 4e-59
 Identities = 176/594 (29%), Positives = 263/594 (44%), Gaps = 77/594 (12%)

Query: 28  ETLNQPFVLNLELVSYESDID----FGHVLDKPALFTLYSADRPLRHVHGLVSAFSQGET 83
           E L +P    L ++S    ID     G   D    F         RH  G    F +   
Sbjct: 27  EALARPSAYELTVLSKNKAIDAKDILGRAFDVVIEFKDADGGTHERHCQGHAVRFVRAGH 86

Query: 84  GFCRTRYHAVVEPQLARARLRSNWRIFQQKTVPQILELMFKRQGITRFELKSS----AQH 139
                 Y   +         R+N RI Q+K V ++L+ +F+   I RF+   +      H
Sbjct: 87  VGRHYEYRITLRSWFWLLTKRTNSRILQEKKVLEVLDAVFEDSPIKRFKKTRADNVIGTH 146

Query: 140 QVREFCVQAGETDLDFIHRLAAEEGFVYRFEHCARQHTLIVTDRLLSFGLLSRGALKAED 199
             R +CVQ  E+D  F+ RL  +EG  Y F+      T+ ++D              A D
Sbjct: 147 NPRRYCVQHQESDYGFLSRLLEDEGIYYWFDAHGAPGTMHLSD--------------ASD 192

Query: 200 DEALWLDEDDVGPDKVLYHASSGGDQARAC-LRRLRYCEQVRTARQVQRDYTFTNPAYRQ 258
                +  + +  +  L+H ++   +AR   + R     Q  T +   RD  F     + 
Sbjct: 193 -----IAHEKLPANDTLHHMATDASEARFNEVSRWVSGRQFGTGKHASRDSDFKAIKKKL 247

Query: 259 EHKAQTSGVTHQSLDYERFDYPGRYKRDAVGKPFTETRLTALR--HDACLAEVQGDDVRL 316
              A  SG  H+    E F++PG Y     G+   + R   LR   D   A     DV  
Sbjct: 248 GADADASG-EHELASLEMFEFPGGYFTGDEGESRAKLRGDELRARRDRHWALTPWPDVAA 306

Query: 317 QTGLSFTLVGHPREDLNVHWRVISLC--------HEGTQLTS--------------LQEE 354
             G  F   G P    N  + +I+ C        +EG   ++              L+++
Sbjct: 307 GRGFKFE--GDPDGTRNGEY-IIAACTFVASHRGYEGVSASAASAARPVQAALAEVLRDD 363

Query: 355 AAGAEQGTRYVND----------------ALLVQGMAEWRP--APMAKPRID--GPHMAT 394
           A  A+   + + D                A L+  M   RP  AP   PR+   GP  A 
Sbjct: 364 AVNADT-LQVLEDLIAATPALAAGQPGTSAFLLTVMPADRPFRAPRLTPRVTMPGPQTAI 422

Query: 395 VVGPPGEEIYCDEWGRVKVSFPWDRESKNNEFSSCWVWVSQGWAGGSWGSMAIPRIGQDV 454
           VVGP G+E++ D+ GRVKV F WDR  +++E S+CWV VSQ WAG  WG    PRIGQ+V
Sbjct: 423 VVGPKGDELHVDDHGRVKVHFHWDRYDESDEKSTCWVRVSQPWAGKGWGGYFAPRIGQEV 482

Query: 455 IVQYVNGDPDQPMITGRTYCGDQLPPYDLPDHKTRMTIKSQTHKGDGFNELRFEDELGRQ 514
           IV ++NGDPD+P+I GR Y  DQ  P+         T  +       FNE RFED+ G++
Sbjct: 483 IVDFLNGDPDRPIIMGRVYNDDQPIPFKSHTQSGFRTRSTPKGNAANFNEFRFEDDKGKE 542

Query: 515 EVFIHAERDQNNVVKHNETTLIGNDRSERVEHDEVVDIGGNRSVKVGASKRETV 568
           +V++HAER+ +  V+ +ET  +G+DR++ V HDE V I  +R+ +V  ++  T+
Sbjct: 543 QVYLHAERNLDVEVEADETRNVGHDRTKTVGHDEKVKIKNDRTEEVTGNETITI 596