Pairwise Alignments

Query, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 792 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  227 bits (579), Expect = 2e-63
 Identities = 185/656 (28%), Positives = 286/656 (43%), Gaps = 104/656 (15%)

Query: 11  QALAGRTEFEVVSFKLDETLNQPFVLNLELVSYESDIDFGHVLDKPALFTLYSADRPLRH 70
           +ALA  + +E+       TL+   +L             G   D    F      R +RH
Sbjct: 27  EALARASSYELTVLSKSRTLDARDIL-------------GRAFDVSIEFEDADGARHVRH 73

Query: 71  VHGLVSAFSQGETGFCRTRYHAVVEPQLARARLRSNWRIFQQKTVPQILELMFKRQGITR 130
             G    F +         Y   +         R N RI Q K V ++L+ +F+   I R
Sbjct: 74  CQGHAVRFMRAGHVGRYFEYRIALRSWFWLLTKRINSRILQDKKVLEVLDAVFEDSPIKR 133

Query: 131 FELKSS----AQHQVREFCVQAGETDLDFIHRLAAEEGFVYRFEHCARQHTLIVTDR--- 183
           F+   +      H+ R +CVQ  E+D  F+ RL  +EG  Y F+      T+ ++D    
Sbjct: 134 FKKTRADNVIGTHEPRRYCVQHQESDYQFLSRLLEDEGIYYWFDAHDAPGTMHLSDASDL 193

Query: 184 -------LLSFGLLSRGALKAEDDE-ALWLDEDDVGPDKVLYHASSGGDQARACLRRLRY 235
                    +   +  GA +  D+E + W+ E                            
Sbjct: 194 AHDKLPAASTLNFMPAGATEPRDNEISRWISE---------------------------- 225

Query: 236 CEQVRTARQVQRDYTFTNPAYRQEHKAQTSGVTHQSLDYERFDYPGRYKR--DAVGKPFT 293
             Q  T +   RD  F +   + E           S ++E F++ G Y    DA  K   
Sbjct: 226 -RQFDTGKYASRDSNFKSIKKKLEATGGEPDKCELS-EFEAFEFAGGYFSGGDADDKGKL 283

Query: 294 ETRLTALRHDACLAEVQGDDVRLQTGLSFTLVGHPREDLNVHWRVISLC-----HEGTQ- 347
                  R     A  +  DV    G SFT  G P    +  + VI+ C     H G + 
Sbjct: 284 RGEEIGARRQRHFALTRWPDVA--AGRSFTFKGDPDAARDGDY-VIAACTFVASHSGYEG 340

Query: 348 --------------LTSLQEEAAGAE---------------QGTRYVNDALLVQGM---A 375
                           +L+++A  A+               +  R  + A L+  M    
Sbjct: 341 VPEVGDPVPLDVLLREALEDDAVCADTLPVLRELVAQTPALRAGRNGDSAFLLTVMPIDV 400

Query: 376 EWRPAPMAKPRI--DGPHMATVVGPPGEEIYCDEWGRVKVSFPWDRESKNNEFSSCWVWV 433
            +RP P   PR+   GP  A VVGP GEEI+ D++GRVKV F WDR  K+NE S+CWV V
Sbjct: 401 PFRP-PRLTPRVRMPGPQSAIVVGPDGEEIHADDFGRVKVHFHWDRYDKSNEKSTCWVRV 459

Query: 434 SQGWAGGSWGSMAIPRIGQDVIVQYVNGDPDQPMITGRTYCGDQLPPYDLPDHKTRMTIK 493
           SQ WAG  WG   IPRIGQ+VIV ++NGDPD+P++ GR Y  DQ  P+         T  
Sbjct: 460 SQPWAGKGWGGYFIPRIGQEVIVDFLNGDPDRPLVIGRVYNDDQPIPFGSHTQSGFRTRS 519

Query: 494 SQTHKGDGFNELRFEDELGRQEVFIHAERDQNNVVKHNETTLIGNDRSERVEHDEVVDIG 553
           +        NE RFED+ G ++V++HAE++Q+  V+++ET  +G+DR + V+HDE V + 
Sbjct: 520 TPKGSAANCNEFRFEDKKGSEQVYLHAEKNQDIEVENDETHWVGHDRKKTVDHDETVHVK 579

Query: 554 GNRSVKVGASKRETVALGKVESIGLGKSLAVGGALSVMVGLEATEQVALDKRVQVG 609
            +R+  VG +++ T+ + + ES+G  +++++G   +  VG   T  +  ++ + VG
Sbjct: 580 HDRTETVGNNEKITIGVNRTESVGNNETISIGVNRTETVGSNETITIGSNRTITVG 635



 Score = 48.1 bits (113), Expect = 2e-09
 Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 24/193 (12%)

Query: 485 DHKTRMTIKSQTHKGDGFNE-----LRFEDELGRQEVFIHAERDQNNVVKHNETTLIGND 539
           DH   + +K    +  G NE     +   + +G  E  I    ++   V  NET  IG++
Sbjct: 571 DHDETVHVKHDRTETVGNNEKITIGVNRTESVGNNET-ISIGVNRTETVGSNETITIGSN 629

Query: 540 ----------------RSERVEHDEVVDIGGNRSVKVGASKRETVALGKVESIGLGKSLA 583
                           R+  V  +E + +G  + + VGA +  TV   +  S+G  +S +
Sbjct: 630 RTITVGASETATVALQRTHTVGVNETITVGAAQEITVGAVQAVTVGASQTISVGANQSSS 689

Query: 584 VGGALSVMVGLEATEQVALDKRVQVGGQLRVDADEDVSITSHHGHVHIDSRTSLTLSCGG 643
           +G   SV VG   T  V  D+   VG        +D S++     V I +  S++++ G 
Sbjct: 690 IGANRSVDVGANLTTNVGSDEARSVGKGRSTSVGKDDSLSVGKNLV-ISAGDSISITTGS 748

Query: 644 AFIKL-SDGRIEI 655
           A I +  DG I I
Sbjct: 749 ASITMKKDGTIVI 761