Pairwise Alignments

Query, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 988 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  239 bits (611), Expect = 4e-67
 Identities = 159/504 (31%), Positives = 241/504 (47%), Gaps = 27/504 (5%)

Query: 28  ETLNQPFVLNLELVSYESDIDFGHVLDKPALFTLYSADRPLRHVHGLVSAFSQGETGFCR 87
           E L+Q +  +++L+   + ID   +L K A  ++   +  +R++ G+ + F   +     
Sbjct: 24  EALSQLYAFDIDLLGSSNGIDAKALLGKAATVSV-ETEGGVRYLGGIATRFGLQQEDARH 82

Query: 88  TRYHAVVEPQLARARLRSNWRIFQQKTVPQILELMFKRQGITRFELKSSAQHQVREFCVQ 147
           + Y   + P L  A LRS++RIFQ K+VP IL  +    G    +  S A ++  ++CVQ
Sbjct: 83  SFYRLRMRPWLWLATLRSDFRIFQAKSVPDILTEVLGPYGYPVEQKLSRADYRRWDYCVQ 142

Query: 148 AGETDLDFIHRLAAEEGFVYRFEHCARQHTLIVTDRLLSFGLLSRGALKAEDDEALWLDE 207
             E+D DF+ RL   EG  Y F H   QH L+  D +      S   L            
Sbjct: 143 YHESDFDFVSRLCELEGIYYYFRHEQSQHVLVFADDMAG----SHSPLP----------- 187

Query: 208 DDVGPDKVLYHA-SSGGDQARACLRRLRYCEQVRTARQVQRDYTFTNPAYRQEHKAQTS- 265
              G ++V YH     G   R  +      E+VR       DY F  P     H  Q   
Sbjct: 188 ---GGEEVRYHPLEKSGMGQRERIYAWEIAEEVRPGHHYNDDYDFEKPKAELSHLRQMPP 244

Query: 266 GVTHQSLDYERFDYPGRYKRDAVGKPFTETRLTALRHDACLAEVQGDDVRLQTGLSFTLV 325
           G  H S  YE +++PG + +   G+ +   R             + +   L TG +  L 
Sbjct: 245 GHDHDS--YENYEWPGGFVQHGDGETYARIRNEEQLSQRNRVTGRANLRELATGHTLRLT 302

Query: 326 GHPREDLNVHWRVISLCHEGTQLTSLQEEAAGAEQGT-RYVNDALLVQGMAEWRPAPMA- 383
           GHP+ D N  + ++S+ +   +     E A G E    R+  DA        WRPA    
Sbjct: 303 GHPKADQNRQYLLVSVSYHLQENLQASEGAEGTEGSVQRFAFDAQPTS--YPWRPARTTP 360

Query: 384 KPRIDGPHMATVVGPPGEEIYCDEWGRVKVSFPWDRESKNNEFSSCWVWVSQGWAGGSWG 443
           KPR  GP  A VVGP GE+I+ D++GR+KV F WDR  K NE SSCWV VS  WAG ++G
Sbjct: 361 KPRTRGPQTAMVVGPAGEQIWTDQYGRIKVQFHWDRIGKENENSSCWVRVSTAWAGATFG 420

Query: 444 SMAIPRIGQDVIVQYVNGDPDQPMITGRTYCGDQLPPYDLPDHKTRMTIKSQTHKGDGFN 503
             ++PRIG +VIV ++NGDPD P++TG  +  D +P ++LP  K    I+S+   G   N
Sbjct: 421 MTSVPRIGMEVIVDFLNGDPDYPIVTGCVHNADTMPAWELPGQKHLSGIRSRELGGGRGN 480

Query: 504 ELRFEDELGRQEVFIHAERDQNNV 527
            L  +D  G+ +  + ++   + +
Sbjct: 481 HLVLDDTQGKIQAQLRSDHQSSQL 504



 Score = 37.0 bits (84), Expect = 5e-06
 Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 28/196 (14%)

Query: 557 SVKVGASKRETVALGKVESIGLGKSLAVGGALSVMVGLEATEQVALDKRVQVGGQLR--- 613
           S  + + +   V+ G   S   GKS  V          +A   VA +  +++        
Sbjct: 640 STHIVSVEHTAVSSGAHASFATGKSFLVSAK-------DAVRMVAFNNGIRMAAAAADID 692

Query: 614 -------VDADEDVSITSHHGHVHIDSRTSLTLSCGGAFIKLSDGRIEIGCPEPLLLHAI 666
                  ++A   ++I      + I ++  + ++ G ++ + + G IE G       HA 
Sbjct: 693 ITALKDSINALAKLNIKLEANRITITAKEEVLINGGSSYTRWNAGGIESGTGGLWRAHAS 752

Query: 667 AQ-VKAPARYGVPPAPE-------QDEIEFRLVHADGTPIAGTA---YVATLSDGTQRQG 715
           +  +  P   G P  P+       Q ++  + V ADG    G     Y    S+G    G
Sbjct: 753 SHSMVGPKSDGQPRLPQPPQLPRGQLDLYHQYVKADGAKRQGVKQGDYTVVDSEGATHTG 812

Query: 716 VVDQNGYARLAGVTPG 731
            +D NG+A L+G+  G
Sbjct: 813 KLDANGFASLSGLPLG 828