Pairwise Alignments

Query, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 754 a.a., vgrG protein from Agrobacterium fabrum C58

 Score =  243 bits (620), Expect = 3e-68
 Identities = 179/558 (32%), Positives = 261/558 (46%), Gaps = 60/558 (10%)

Query: 69  RHVHGLVSAFSQGETGFCRTRYHAV-VEPQLARARLRSNWRIFQQKTVPQILELMFKRQG 127
           R  +GLV+   +G       R +A+ + PQ+     RS+ RI+  KT  +I+E +F   G
Sbjct: 84  RPFNGLVTELHEGPPITRGMRSYALTIRPQMWLLSRRSDCRIWMDKTAVEIVETLFSEHG 143

Query: 128 ITRFELKS-----SAQHQVREFCVQAGETDLDFIHRLAAEEGFVYRFEHCARQHTLIVTD 182
           I   +         AQH    + VQ  ETDLD++ R   E+G  Y F H    H L V D
Sbjct: 144 IPAPDTSGIISPPPAQH----YSVQFNETDLDYLTRRFEEDGLFYWFSHEDGSHKLHVAD 199

Query: 183 RLLSFGLLSRGALKAEDDEALWLDEDDVGPDKVLYHASSGGDQARACLRRLRYCEQVRTA 242
               +     G   A   E              L   SS  +      RR  Y    R  
Sbjct: 200 SASGW----LGPSPAAQGEGTVR----------LAQGSSDRNHINDWARRFSYVSGQRAG 245

Query: 243 RQVQRDYTFTNPAYRQEHKAQTSGVTHQSLDYERFDYPGRYKRDAVGKPFTETRLTALRH 302
                D+ F  P         +      +   E ++YP R K     +   + R  ++  
Sbjct: 246 A----DWNFETPGMVPGTMTPSLVQMPDATKRELYEYPARIKTVEEAERAQKLRTQSIEA 301

Query: 303 DACLAEVQGDDVRLQTGLSFTL--VGHPREDLNVHWRVISLCHEGTQLTSLQEEAAGAEQ 360
           D            L+ G  FT   V HP      H  ++   H    +  L  E    E 
Sbjct: 302 DHDRVFGSSTTRILEAGRRFTPFEVAHPEHAYEEHV-IVRASHS---IVDLSYETNSNEP 357

Query: 361 GTRYVNDALLVQGMAEWRPAPMAK-PRIDGPHMATVVGPPGEEIYCDEWGRVKVSFPWDR 419
              Y N    +       P    K PRI+G  +A V GP GEEI+ D++GR+K+ FPWDR
Sbjct: 358 --EYRNHFEAIPARVPLTPHRSTKRPRIEGTQVAIVAGPEGEEIHPDQYGRIKLWFPWDR 415

Query: 420 ESKNNEFSSCWVWVSQGWAGGSWGSMAIPRIGQDVIVQYVNGDPDQPMITGRTYCGDQLP 479
           ++K +   +CWV VSQ W GG+WG+  IPRIG +V+V +V+GDPD+P++ G         
Sbjct: 416 KAKKDGTDTCWVRVSQAWGGGTWGAQVIPRIGMEVMVAFVDGDPDKPLVIGVVNNPANSV 475

Query: 480 PYDLPDHKTRMTIKSQTHKGDGFNELRFEDELGRQEVFIHAERDQNNVVKHNETTLIGND 539
           PYDLP +KTRM ++S +HKGDGFNE+ FEDE G++  F HA++DQ        TT + ND
Sbjct: 476 PYDLPANKTRMVLRSNSHKGDGFNEITFEDEAGKENQFFHAQKDQ--------TTRVLND 527

Query: 540 RSERVEHDEVVDIGGNRSVKVGASKRETVALGKVESIGLGKSLAVGG----ALSVMVGLE 595
           R++R++  EV  +GGNR+V+V  +++  +  G V ++       VGG    A+  M G++
Sbjct: 528 RTKRIDRHEVASVGGNRAVEVSGNQKHEIG-GSVNTV-------VGGTGPMAMMAMAGVQ 579

Query: 596 A-TEQVA--LDKRVQVGG 610
           A + Q A  L +  Q+ G
Sbjct: 580 ALSGQTAGLLSQAAQIAG 597



 Score = 27.3 bits (59), Expect = 0.003
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 552 IGGNRSVKVGASKRETVALGKVESIGLGKSLAVGGALSVMVG 593
           +G  R+ ++G SK   V    +ES+G  K +AVG    +  G
Sbjct: 676 VGVARAEQIGVSKVTNVGQTSLESVGKFKKIAVGEEFVIECG 717