Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 907 a.a., DNA topoisomerase 1 from Xanthobacter sp. DMC5

 Score =  129 bits (324), Expect = 6e-34
 Identities = 172/631 (27%), Positives = 268/631 (42%), Gaps = 119/631 (18%)

Query: 1   MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRWN 60
           M++ + E P++AK I K LG          G ++  ++  GH+ +    D          
Sbjct: 13  MQVVIVESPAKAKTINKYLGP---------GYEVIASY--GHVRDLPSKDG--------- 52

Query: 61  LADLPIIPDK-WKML--VKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHC 117
                + PD  ++ML  V PK   +   +   +  A  L++ATD DREGE I+  ++E  
Sbjct: 53  ----SVDPDADFRMLWDVDPKAQKRLNEIAAAVKGADGLILATDPDREGEAISWHVLEVL 108

Query: 118 RYRGP-----VQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSR 172
           R +       V+R+  +A+   ++ +A+    P      L  + L R   D+L+G  +S 
Sbjct: 109 RQKKALKSQKVERVVFNAITKQAVLEAMKS--PRAIDSALVDAYLARRALDYLVGFTLS- 165

Query: 173 LFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQ 232
              +L R+    G    GRVQ+  LRLV DR+R I  FV   +W+I  +L  A  R N +
Sbjct: 166 --PVLWRK--LPGARSAGRVQSVALRLVCDREREIETFVRKEYWSILAKL--ATPR-NEE 218

Query: 233 WRAPEDACDDQGRCLKQSLAQQAAADIGHAGTARAVKVATE----RVR--EAAPL----- 281
           + A     D +         +     +G A  ARA + A +    RVR  EA P+     
Sbjct: 219 FEARLSGADGK---------KITRLSVGTAEEARAFREALDSAAFRVRSVEAKPMKRHPQ 269

Query: 282 -PFDLGTLQELCSKKFGLGAQETLDIAQALY-------ETHKLITYPRSDCGYLPQSQHA 333
            PF   TLQ+  S+K GL    T+ IAQ LY       ET  LITY R+D   +      
Sbjct: 270 PPFTTSTLQQEASRKLGLAPARTMQIAQRLYEGVDVGGETVGLITYMRTDGVDM------ 323

Query: 334 EAPAILAALQRADASLAPLQPYLE--PQRRSRAWNDAKVSAHHGIIPTAAASDPSRLP-- 389
            AP  +AA + A       Q YL   P++ +    +A+  AH  I PT    DPSR P  
Sbjct: 324 -APEAVAATRDAIGKQFG-QKYLPGVPRKYTTKAKNAQ-EAHEAIRPT----DPSRHPRD 376

Query: 390 ------AKHKAVYTLIRARYLAQFLPNHEYDRTQADFDCAGHA----LRAVGKQIVEPGW 439
                  +   +Y LI  R +A  + + E +RT AD +    A    L A G  +   G+
Sbjct: 377 VARYLDGEQAKLYELIWIRTVASQMESAELERTTADIEAKAGARTLDLTATGTVVKFDGF 436

Query: 440 RRALPEALTPAKGREAPPAQVLPALREGQDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKN 499
                E        E    + LPA+   +      +     +T+PP  ++E  L+K M  
Sbjct: 437 LTLYREGKDDEDDDE--EGRRLPAMSANEALAKRDISTTQHFTEPPPRYSEASLVKRM-- 492

Query: 500 VAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLVKNGKAL---SATPAAFSLID 556
                          E  GIG  +T A+++  L DR Y+  + K L          + ++
Sbjct: 493 ---------------EELGIGRPSTYAAVLAVLRDREYVKLDKKKLVPEDKGRLVTAFLE 537

Query: 557 AVPRAIADPGTTAIWEQALDMVQSGEMPLEE 587
           +  +   +   TA  E+ LD V + E+  +E
Sbjct: 538 SFFKRYVEYDFTADLEEKLDEVSAAELDWKE 568