Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

 Score = 1056 bits (2730), Expect = 0.0
 Identities = 525/649 (80%), Positives = 568/649 (87%), Gaps = 4/649 (0%)

Query: 1   MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRWN 60
           MRL+LCEKPSQAKDIA VLGA+R+GDGCW G  + VTWCIGHLLETAPPD+YDE+YKRW 
Sbjct: 1   MRLYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLETAPPDAYDEKYKRWV 60

Query: 61  LADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCRYR 120
           LADLPI+P+KWKM VKPKTASQFKAVKRLLGEA+ELVIATDADREGEMIARELVEHCRYR
Sbjct: 61  LADLPIVPEKWKMRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIARELVEHCRYR 120

Query: 121 GPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQ 180
           GP+QRLWLSALDDASIRKALA L PG ETF+LYHSALGRSRADWLIGMNMSRLFTLLGRQ
Sbjct: 121 GPIQRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQ 180

Query: 181 SGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQWRAPEDAC 240
           SGYQGVLPVGRVQTPTLRLVVDRDRSIA+FVPV +WAIDV L+H    F AQWRA EDAC
Sbjct: 181 SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERITFTAQWRAAEDAC 240

Query: 241 DDQGRCLKQSLAQQAAADIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSKKFGLGA 300
           DDQGRCL   LA+ AA  + +A TAR VK+ TER+RE APLPFDLGTLQE+CSKK GLGA
Sbjct: 241 DDQGRCLDPQLARDAADAMRNAATARLVKLRTERMREVAPLPFDLGTLQEICSKKLGLGA 300

Query: 301 QETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLAPLQPYLEPQR 360
           QETLDIAQ+LYETHK+ITYPRSDCGYLP SQH+EAP ILAAL RADA++  L P++E QR
Sbjct: 301 QETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPKILAALARADAAVNELMPHIETQR 360

Query: 361 RSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLPNHEYDRTQADF 420
           RSRAWNDAKVSAHHGIIPT A  D  +L  KH+AVYTLIRARYLAQFLPNHEYDRTQADF
Sbjct: 361 RSRAWNDAKVSAHHGIIPTGAGKDVGQLTGKHRAVYTLIRARYLAQFLPNHEYDRTQADF 420

Query: 421 DCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREGQDCNVHGLQLKDL 480
           DCAG ALRAVGK ++EPGW+RALPEAL PAKGREAP  Q LPAL +GQD  V  + LKDL
Sbjct: 421 DCAGQALRAVGKVVIEPGWKRALPEALAPAKGREAPAPQALPALVQGQDYAVAKVNLKDL 480

Query: 481 WTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLVK 540
           WTQPPKPFTEGDLIKAMKNVAKLV+DP LKQKLK+TTGIGTEATRA IIQGLLDRGYLVK
Sbjct: 481 WTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLVK 540

Query: 541 NGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMPLEEFVARQSAWMGKLV 600
           NGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEM LEEFVA+Q+AWM K V
Sbjct: 541 NGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSLEEFVAKQAAWMSKQV 600

Query: 601 ERCSGMRMTISGPAAGA---APPWKKKRRGGGKSKATGSKATPSKPRQA 646
            RC+GMRMTI+GPA+ A   A PWKKKR+   +  A   K    KP  A
Sbjct: 601 ARCNGMRMTITGPASPAGRGATPWKKKRKSAPRKTAASPKRA-KKPTNA 648