Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 987 a.a., DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) from Variovorax sp. SCN45

 Score =  276 bits (707), Expect = 2e-78
 Identities = 199/658 (30%), Positives = 318/658 (48%), Gaps = 47/658 (7%)

Query: 3   LFLCEKPSQAKDIAKVL----GANRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKR 58
           L + EKPS A+DI + L    G   K D  ++     VT  +GHL+E   P+ +D +  +
Sbjct: 5   LVIAEKPSVAQDIVRALTPVAGKFDKHDEHFENDSYVVTSAVGHLVEIQAPEEFDVKRGK 64

Query: 59  WNLADLPIIPDKWKMLVKPKTASQFKAVKRLLG--EARELVIATDADREGEMIARELVEH 116
           W+ A+LP+IP  + +    KT ++  AV +     +  +L+ A DA REGE+I R + ++
Sbjct: 65  WSFANLPVIPPHFDLKPVDKTKTRLNAVVKQAKRKDVTQLINACDAGREGELIFRLIEQY 124

Query: 117 CRYRG----PVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSR 172
              +     PV+RLWL ++   +IR     L    +   L  +A  RS ADWL+G+N +R
Sbjct: 125 AGGKSGLNKPVKRLWLQSMTPQAIRDGFDALRTEKQMQGLADAARSRSEADWLVGINGTR 184

Query: 173 LFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQL-----EHAGQ 227
             T    + G   +  VGRVQTPTL +VV+R+  I  FV   +W I         E+ G+
Sbjct: 185 AMTAFNSRDGGFFLTTVGRVQTPTLSVVVEREEQIRKFVSRDYWEIHGTFAAEAGEYPGK 244

Query: 228 RFNAQWRAPEDACDDQGRCLKQSLA-----QQAAADIGHAGTARAVKVATER--VREAAP 280
            FN  W+         G    +  A     +Q A  I  A   +   V  E     +A+P
Sbjct: 245 WFNPDWKKANAPLLANGEPDPEQRADRVWNEQEARAIADAARGKPATVTEESKPTTQASP 304

Query: 281 LPFDLGTLQELCSKKFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILA 340
           + FDL +LQ   + +FG  A+ TL +AQ+LYE HK +TYPR+D   LP+         + 
Sbjct: 305 MLFDLTSLQREANGRFGFSAKTTLALAQSLYERHKALTYPRTDSRALPEDYLPVVKDTMG 364

Query: 341 ALQRADASLAPLQP---------YLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAK 391
            L  A++ +  L P         Y+ P +  R +++AKVS H  IIPT  A  PS L   
Sbjct: 365 ML--ANSGMKHLAPFAKQAVDGNYVRPNK--RIFDNAKVSDHFAIIPTLQA--PSGLSEA 418

Query: 392 HKAVYTLIRARYLAQFLPNHEYDRTQ--ADFDCAG--HALRAVGKQIVEPGWRRALPEAL 447
            + +Y  +  R+L+ F P+ EY  T   +  +  G  +  R  GK +V+PGW     +  
Sbjct: 419 EQKLYDFVVRRFLSVFFPSAEYQVTTRISTVEQGGKKYPFRTDGKVLVKPGWLAIYGKEA 478

Query: 448 TPAKGREAPPAQVLPALREGQDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDP 507
              +  +    + L  ++ G+         K L T+PP  ++E  L+ AM+   K +DD 
Sbjct: 479 QDDEKEDDKDGKRLVPVKPGEIVKTESADTKGLKTRPPARYSEATLLGAMEGAGKTIDDD 538

Query: 508 RLKQKLKETTGIGTEATRASIIQGLLDRGYLVKNGKALSATPAAFSLIDAV----PRAIA 563
            L++ ++E  G+GT ATRA+ I+GL+   Y+++ G+ L  T  AF L+  +       ++
Sbjct: 539 ELREAMQE-KGLGTPATRAATIEGLITEKYMLREGRELIPTAKAFQLMTLLRGLGVEELS 597

Query: 564 DPGTTAIWEQALDMVQSGEMPLEEFVARQSAWMGKLVERCSGM-RMTISGPAAGAAPP 620
               T  WE  L  ++ G +  + F+   +     +V++     R T+ G  A    P
Sbjct: 598 KAELTGEWEYKLAQMEKGALSRDAFMREIAQMTEHIVKKAKEYDRDTVPGDYATLQTP 655