Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 815 a.a., DNA topoisomerase III from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  358 bits (918), Expect = e-103
 Identities = 227/655 (34%), Positives = 347/655 (52%), Gaps = 35/655 (5%)

Query: 1   MRLFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLETAPPDSYDERYKRWN 60
           M++ + EKPS A++IA V+GA  K DG ++G    VTW  GH      PD Y   +KRW+
Sbjct: 1   MKVCIAEKPSVAREIAMVIGAKAKKDGYYEGNGYQVTWTFGHFCTLREPDDYRPEWKRWS 60

Query: 61  LADLPIIPDKW--KMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIARELVEHCR 118
           L DLP++P+K+  K++       QFK +K+LL +A E++   DA +EGE+I R ++   +
Sbjct: 61  LYDLPMLPEKYGIKLMKDSGVQKQFKIIKQLLDKAEEVINCGDAGQEGEVIQRWVLTEAK 120

Query: 119 YRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRLFTLLG 178
           YR P +RLW+S+L + +IR+  A+L  G E  +LY +   R+  DWL+G+N +RLFT L 
Sbjct: 121 YRKPFKRLWISSLTEEAIRQGFAKLREGAEFDSLYQAGKSRAIGDWLLGLNATRLFT-LK 179

Query: 179 RQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQWRAPED 238
             +G +  L +GRVQTPTL ++V+R   IANFVP PFW  +++  +    F++       
Sbjct: 180 YANGSRQTLSIGRVQTPTLAMLVNRHHEIANFVPQPFW--ELKTLYRDTTFSS------- 230

Query: 239 ACDDQGRCLKQSLAQQAAADIGHAGTARAVKVATERVREAAPLPFDLGTLQELCSKKFGL 298
                GR  K+  A +    I  A       V T++  EA P  FDL +LQ  C+ K  L
Sbjct: 231 ---TNGRFQKEEEALKIMEAIREA-ELTITDVETKKGTEAPPKLFDLTSLQIECNNKLSL 286

Query: 299 GAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLAPLQPYLEP 358
            A ETL   Q+LYE  K+++YPR D  +LP   + + P IL  L      +APL    + 
Sbjct: 287 SADETLKTVQSLYE-KKVVSYPRVDTTFLPDDIYPKIPGILQGLSNYSQEVAPLLQN-KI 344

Query: 359 QRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHKAVYTLIRARYLAQFLPNHEYDRTQA 418
           ++  + +N+ KV+ HH IIPT AA+    L  +   VY +I  R++A F P+     T  
Sbjct: 345 RKTKKVFNNNKVTDHHAIIPTGAAA--GGLYGREADVYDIITRRFIAAFYPDCIVSNTTV 402

Query: 419 DFDCAGHALRAVGKQIVEPGWR--RALPEALTPAKGREA----PPAQVLPALREGQDCNV 472
             + AG+  +  GKQI++PGWR      +  +   G++A      A VLP   +G+    
Sbjct: 403 MAESAGYTFKVRGKQILDPGWRVIYGAEDVKSEPTGKDAKEEEEAAGVLPHFEKGEH-GP 461

Query: 473 HGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRASIIQGL 532
           H   L+   T PPK +TE  L++AM+   K V+D  LK  LKE  GIG  +TRA+II+ L
Sbjct: 462 HEPLLEKKMTNPPKEYTEATLLRAMETAGKQVEDEELKDALKE-NGIGRPSTRAAIIETL 520

Query: 533 LDRGYLVKNGKALSATPAAFSLIDAV-PRAIADPGTTAIWEQALDMVQSGEMPLEEFVAR 591
             R Y+ K+ K +  T     LI  +    +     T  WE+ L  ++ GE   E F+  
Sbjct: 521 FKRQYIRKDKKKIVPTQMGIDLIGVIRNETLKSAEMTGQWERKLRQIEGGEFKAEAFLQE 580

Query: 592 QSAWMGKLVERCSGMRMTISGPAAGAAPPWKKKRRGGGKSKATGSKATPSKPRQA 646
              ++  LV+     R T++        P + +++   K K   + + P++   A
Sbjct: 581 LQEFVMNLVQEVKYDRATVT------IEPQQDEKKPAAKGKKPAAASKPAEKADA 629