Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 876 a.a., DNA topoisomerase I, bacterial from Kangiella aquimarina DSM 16071

 Score =  142 bits (358), Expect = 6e-38
 Identities = 151/561 (26%), Positives = 249/561 (44%), Gaps = 73/561 (13%)

Query: 57  KRWNLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIA---REL 113
           K W  A   ++P K K+L           +K+L  +A  + +ATD DREGE IA   REL
Sbjct: 89  KSWE-AQYEVLPGKEKVL---------NELKKLAKDADTIYLATDLDREGEAIAWHLREL 138

Query: 114 VEHCRYRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSRL 173
           ++    R   +R+  + +   +I++A ++  PG    N  ++   R   D ++G  +S  
Sbjct: 139 LDGDESR--FKRVVFNEITKKAIQQAFSK--PGELDMNYVNAQQARRFLDRVVGFMVS-- 192

Query: 174 FTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQW 233
             LL R+      L  GRVQ+  +RL+V+R+R I  F+P  +W I     HA     ++ 
Sbjct: 193 -PLLWRKISRG--LSAGRVQSVAVRLLVEREREIRAFIPEEYWDI-----HANTLTQSKD 244

Query: 234 RAPEDACDDQGRCLKQSLAQQA--AADIGHAGTARAVKVATERVREAAPLPFDLGTLQEL 291
                    QG+  + +  ++   A ++  +   + V    +  +  AP PF   TLQ+ 
Sbjct: 245 DLRLQVNKYQGKNFRPNSEEETNKALEVLKSSDYKVVTREDKPQKSKAPKPFITSTLQQA 304

Query: 292 CSKKFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLAP 351
            S + G G ++T+ +AQ LYE    ITY R+D      S +  A A+ +       ++  
Sbjct: 305 ASTRLGFGVKKTMMMAQRLYEA-GYITYMRTD------STNLSADAVESCRDYIKTNIG- 356

Query: 352 LQPYLEPQRRSRAWNDAKVSAHHGIIPTAAASDPSRLPAKHK---AVYTLIRARYLA-QF 407
              YL  +  S +  +    AH  I P+  A     L    K    +Y LI  +++A Q 
Sbjct: 357 -GEYLPKEANSYSSKEGAQEAHEAIRPSDVAKKVGHLNGMEKDAERLYDLIWRQFVACQM 415

Query: 408 LPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREG 467
           LP  E+D T        + L+A G+ +   GW + LP     A+  E      LP ++EG
Sbjct: 416 LP-AEFDVTSLKVQAGDYELKARGRVMRFDGWTKVLPMQKKNAEDEE------LPNVKEG 468

Query: 468 QDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRAS 527
           +   +  L+ K  +T+PP  ++E  L+K +                 E  GIG  +T AS
Sbjct: 469 EMLELKKLEPKQHFTKPPARYSEAALVKEL-----------------EKRGIGRPSTYAS 511

Query: 528 IIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRA---IADPGTTAIWEQALDMVQSG--- 581
           II  + DRGY+    +   A      + + +  +   + D   TA  E+ LD + SG   
Sbjct: 512 IISTIQDRGYVRLENRRFYAQKIGEIVTERLVESFNDLLDYSFTATMEKHLDDIASGRQN 571

Query: 582 -EMPLEEFVARQSAWMGKLVE 601
            ++ L+EF    S  + K  E
Sbjct: 572 WKVTLDEFYDEFSKQLKKADE 592