Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 870 a.a., type I DNA topoisomerase from Erwinia tracheiphila SCR3

 Score =  115 bits (289), Expect = 6e-30
 Identities = 152/618 (24%), Positives = 242/618 (39%), Gaps = 103/618 (16%)

Query: 3   LFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLE----------------- 45
           L + E P++AK I K LG            D  V   +GH+ +                 
Sbjct: 5   LVIVESPAKAKTINKYLG-----------NDYVVKSSVGHIRDLPTSGSTVKKSTDSTTS 53

Query: 46  -TAPPDSYDER-----------YKRWNLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEA 93
            T      DE+           Y  W+ A+  I+P K K++ +         +K L   A
Sbjct: 54  KTTKKVKKDEKAALVSRMGVDPYNGWD-ANYQILPGKEKVVSE---------LKALAENA 103

Query: 94  RELVIATDADREGEMIA---RELVEHCRYRGPVQRLWLSALDDASIRKALARLLPGHETF 150
             + +ATD DREGE IA   RE++     R    R+  + +   +IR A  +  PG    
Sbjct: 104 DHIYLATDLDREGEAIAWHLREVIGGDDSR--FSRVVFNEITKNAIRHAFDK--PGELNI 159

Query: 151 NLYHSALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANF 210
           +  ++   R   D ++G  +S L      +      L  GRVQ+  +RLVV+R+  I  F
Sbjct: 160 SRVNAQQARRFMDRVVGYMVSPLLWKKIARG-----LSAGRVQSVAVRLVVEREHEIKAF 214

Query: 211 VPVPFWAIDVQLEHAGQRFNAQWRAPEDACDDQGRCLKQSLAQQAAADIGHAGTARAVKV 270
           VP  +W +   L     R N          D   + +  S   QAA  +      R  + 
Sbjct: 215 VPEEYWELHANLN--TPRGNDLLMEVTHHHDSPFKPV-NSEQTQAAVSLLENALYRVAER 271

Query: 271 ATERVREAAPLPFDLGTLQELCSKKFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQS 330
             +        PF   TLQ+  S + G G ++T+ +AQ LYE    ITY R+D      S
Sbjct: 272 EDKPTSSKPGAPFITSTLQQAASTRLGYGVKKTMMMAQRLYEAGH-ITYMRTD------S 324

Query: 331 QHAEAPAILAALQRADASLAPLQPYLEPQRRSRAWNDAKVSAHHGIIPT---AAASDPSR 387
            +    A+       D +      YL       A  D    AH  I P+     +     
Sbjct: 325 TNISQDALSMVRDYIDNAFG--TQYLPKDPNVYASKDNSQEAHEAIRPSDVDVLSEQLKD 382

Query: 388 LPAKHKAVYTLIRARYLAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEAL 447
           + A  + +Y LI  +++A  +   +YD T    +     L+A G+ +   GW R +P   
Sbjct: 383 MEADAQKLYQLIWRQFVACQMVPAKYDATTLTVNAGDFKLKARGRTLRFDGWTRVMPAL- 441

Query: 448 TPAKGREAPPAQVLPALREGQDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDP 507
                R+    + LP +  G+   +  L+    +T+PP  F+E  L++ +          
Sbjct: 442 -----RKGDEDRSLPLIEVGEALTLLQLKPSQHFTKPPARFSEASLVREL---------- 486

Query: 508 RLKQKLKETTGIGTEATRASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVP---RAIAD 564
                  E  GIG  +T ASII  + DRGY+  + +   A      + + +    R + +
Sbjct: 487 -------EKRGIGRPSTYASIISTIQDRGYVRVDSRRFYAEKMGEIVTNRLEENFRELMN 539

Query: 565 PGTTAIWEQALDMVQSGE 582
              TA  E  LD+V + E
Sbjct: 540 YDFTAHMENNLDLVANNE 557