Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 865 a.a., type I DNA topoisomerase from Escherichia coli ECRC100

 Score =  127 bits (320), Expect = 2e-33
 Identities = 159/623 (25%), Positives = 253/623 (40%), Gaps = 113/623 (18%)

Query: 3   LFLCEKPSQAKDIAKVLGANRKGDGCWQGTDICVTWCIGHLLE----------------- 45
           L + E P++AK I K LG+           D  V   +GH+ +                 
Sbjct: 5   LVIVESPAKAKTINKYLGS-----------DYVVKSSVGHIRDLPTSGSAAKKSADSTST 53

Query: 46  -TAPPDSYDER-----------YKRWNLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEA 93
            TA     DER           +  W  A   ++P K K++ +         +K+L  +A
Sbjct: 54  KTAKKPKKDERGALVNRMGVDPWHNWE-AHYEVLPGKEKVVSE---------LKQLAEKA 103

Query: 94  RELVIATDADREGEMIA---RELV--EHCRYRGPVQRLWLSALDDASIRKALARLLPGHE 148
             + +ATD DREGE IA   RE++  +  RY     R+  + +   +IR+A  +  PG  
Sbjct: 104 DHIYLATDLDREGEAIAWHLREVIGGDDARY----SRVVFNEITKNAIRQAFNK--PGEL 157

Query: 149 TFNLYHSALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIA 208
             +  ++   R   D ++G  +S L      +      L  GRVQ+  +RLVV+R+R I 
Sbjct: 158 NIDRVNAQQARRFMDRVVGYMVSPLLWKKIARG-----LSAGRVQSVAVRLVVEREREIK 212

Query: 209 NFVPVPFWAIDVQ-LEHAGQRFNAQWRAPEDACDDQGRCLKQSLAQQAAADIGHAGTAR- 266
            FVP  FW +D      +G+    Q     D      +  +    +Q  A +     AR 
Sbjct: 213 AFVPEEFWEVDASTTTPSGEALALQVTHQND------KPFRPVNKEQTQAAVSLLEKARY 266

Query: 267 AVKVATERVREAAP-LPFDLGTLQELCSKKFGLGAQETLDIAQALYETHKLITYPRSDCG 325
           +V    ++   + P  PF   TLQ+  S + G G ++T+ +AQ LYE    ITY R+D  
Sbjct: 267 SVLEREDKPTTSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA-GYITYMRTDST 325

Query: 326 YLPQSQHAEAPAILAALQRADASLAPLQPYLEPQRRSRAWNDAKVSAHHGIIPT---AAA 382
            L Q            + R   S    + YL       A  +    AH  I P+     A
Sbjct: 326 NLSQD--------AVNMVRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMA 377

Query: 383 SDPSRLPAKHKAVYTLIRARYLAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRA 442
                + A  + +Y LI  +++A  +   +YD T          L+A G+ +   GW + 
Sbjct: 378 ESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKV 437

Query: 443 LPEALTPAKGREAPPAQVLPALREGQDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNVAK 502
           +P        R+    ++LPA+ +G    +  L     +T+PP  F+E  L+K +     
Sbjct: 438 MPAL------RKGDEDRILPAVDKGDALTLVELTPAQHFTKPPARFSEASLVKEL----- 486

Query: 503 LVDDPRLKQKLKETTGIGTEATRASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVP--- 559
                       E  GIG  +T ASII  + DRGY+    +   A      + D +    
Sbjct: 487 ------------EKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENF 534

Query: 560 RAIADPGTTAIWEQALDMVQSGE 582
           R + +   TA  E +LD V + E
Sbjct: 535 RELMNYDFTAQMENSLDQVANHE 557