Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Pseudomonas putida KT2440

Subject, 867 a.a., type I DNA topoisomerase from Dickeya dianthicola ME23

 Score =  129 bits (324), Expect = 6e-34
 Identities = 148/553 (26%), Positives = 228/553 (41%), Gaps = 71/553 (12%)

Query: 56  YKRWNLADLPIIPDKWKMLVKPKTASQFKAVKRLLGEARELVIATDADREGEMIA---RE 112
           Y+ W  A   I+P K K++ + K  +Q          A  + +ATD DREGE IA   RE
Sbjct: 78  YRGWQ-AHYEILPGKEKVVSELKALAQ---------NADHVYLATDLDREGEAIAWHLRE 127

Query: 113 LVEHCRYRGPVQRLWLSALDDASIRKALARLLPGHETFNLYHSALGRSRADWLIGMNMSR 172
           ++     R    R+  + +   +IR+A     PG    N  ++   R   D ++G  +S 
Sbjct: 128 IIGGDDKR--FSRVVFNEITKNAIRQAFEN--PGELNINRVNAQQARRFMDRVVGYMVSP 183

Query: 173 LFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPVPFWAIDVQLEHAGQRFNAQ 232
           L      +      L  GRVQ+  +RLVV+R+R I  FVP  +W +     HA    N +
Sbjct: 184 LLWKKIARG-----LSAGRVQSVAVRLVVEREREIKAFVPEEYWEL-----HADLLANPE 233

Query: 233 WRAPEDACDDQGRCLKQSLAQQAAADIGHAGTARAVKVATE-RVREAAP-LPFDLGTLQE 290
                      G+  +     Q  A +     AR V    E +   + P  PF   TLQ+
Sbjct: 234 IALQMQVTHHNGKPFRPVNQAQTQAAVSLLEKARYVVAEREDKPTSSKPGAPFITSTLQQ 293

Query: 291 LCSKKFGLGAQETLDIAQALYETHKLITYPRSDCGYLPQSQHAEAPAILAALQRADASLA 350
             S + G G ++T+ +AQ LYE    ITY R+D   L  SQ A   A             
Sbjct: 294 AASTRLGFGVKKTMMMAQRLYEAGH-ITYMRTDSTNL--SQDALTMARDYIHDEFGKRYL 350

Query: 351 PLQPYLEPQRRSRAWNDAKVSAHHGIIPT---AAASDPSRLPAKHKAVYTLIRARYLAQF 407
           P  P L   + +         AH  I P+     A     + A  + +Y LI  +++A  
Sbjct: 351 PEAPNLYTSKEN------SQEAHEAIRPSDVKVQADQLKDMEADAQKLYQLIWRQFVACQ 404

Query: 408 LPNHEYDRTQADFDCAGHALRAVGKQIVEPGWRRALPEALTPAKGREAPPAQVLPALREG 467
           +   +YD T        + LRA G+ +   GW + +P        R+    + LPA+  G
Sbjct: 405 MMPAQYDSTTLVVSAGDYQLRAKGRTLRFDGWTKVMPAL------RKGDEDRTLPAIDVG 458

Query: 468 QDCNVHGLQLKDLWTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKETTGIGTEATRAS 527
           Q  ++  L     +T+PP  ++E  L+K +                 E  GIG  +T A+
Sbjct: 459 QSLSLEKLSPSQHFTKPPARYSEASLVKEL-----------------EKRGIGRPSTYAA 501

Query: 528 IIQGLLDRGYLVKNGKALSATPAAFSLIDAVP---RAIADPGTTAIWEQALDMVQSGEMP 584
           II  + DRGY+    +   A      + D +    R + +   TA  E  LD+V + +  
Sbjct: 502 IISTIQDRGYVRVENRRFYAEKMGEIVTDRLEDNFRELMNYDFTARMENRLDLVANSQAE 561

Query: 585 ----LEEFVARQS 593
               L+EF A  S
Sbjct: 562 WKGVLDEFFAEFS 574