Pairwise Alignments

Query, 441 a.a., DNA-dependent ATPase required for recombination from Pseudomonas putida KT2440

Subject, 437 a.a., Replication-associated recombination protein RarA from Sphingobium sp. HT1-2

 Score =  398 bits (1022), Expect = e-115
 Identities = 217/431 (50%), Positives = 289/431 (67%), Gaps = 13/431 (3%)

Query: 2   DLFRSEPVAQ------PLAARLRPSSLDEYVGQEHLLARGKPLREALEQGALHSMIFWGP 55
           DLF S+ V        PLA RLRP+ L + VGQEHL      +   +  G L S++FWGP
Sbjct: 3   DLFSSDDVLPAGIDHAPLADRLRPAVLADVVGQEHLTGPDGAIGRMVAAGRLSSILFWGP 62

Query: 56  PGVGKTTLARLLAQFCDAHFETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHR 115
           PG GKTT++RLLA      FE +SAV +GV ++++    AK   G+ G +T+LFVDE+HR
Sbjct: 63  PGTGKTTISRLLADAVGMRFEPISAVFSGVADLKKVFAAAKDH-GRRGEKTLLFVDEIHR 121

Query: 116 FNKSQQDAFLPYVEDGTLLFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRA 175
           FN++QQD+FLP+VEDGT+  +GATTENPSFELN ALLSRA+V +L+ LD  AL +L++RA
Sbjct: 122 FNRAQQDSFLPFVEDGTVTLVGATTENPSFELNAALLSRAQVLILRRLDADALEQLLDRA 181

Query: 176 LTEERGLGKRNLRVGDDAFKMLMAAADGDGRRMLNFLENASDLAEDGSEIDVEMLQSLLG 235
                 L  R L +   A + L+A+ADGDGR +LN +E    + +  + +D   L +LL 
Sbjct: 182 ----EALIGRPLPLDIAAREALLASADGDGRFLLNQVETLYSI-DIPAPLDPAGLSALLH 236

Query: 236 DSRRRFDKGGEAFYDQISALHKSVRGSNPDGALYWFARMLDGGCDPLYIARRVVRMASED 295
                +DK  E  Y+ ISALHKS+RGS+P  ALY+ ARML  G +PLY+ RR+VR A+ED
Sbjct: 237 RRVAVYDKDREGHYNLISALHKSLRGSDPQAALYYLARMLTAGEEPLYVLRRLVRFATED 296

Query: 296 IGNADPRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSNAVYVGFKTALREAAE 355
           IG ADP+A+  CLAA D  E LGSPEGELA+ QA  Y A APKSNA Y+  KTA R A E
Sbjct: 297 IGLADPQAVIQCLAAKDAYEFLGSPEGELAIVQACIYCATAPKSNAGYMAMKTAFRTARE 356

Query: 356 HGSLEVPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFPDELEPRQYYQPVPRG 415
            GSL  P+++ NAPTKLMKQ+GYG  Y+Y HD    + +G +Y+P+E+ P+ +Y P  RG
Sbjct: 357 TGSLMPPMNIVNAPTKLMKQVGYGKNYQYDHDAEGGF-SGANYWPEEMSPQTFYTPTERG 415

Query: 416 LELKIGEKLRH 426
            E +I E++ +
Sbjct: 416 FEARIAERIAY 426