Pairwise Alignments

Query, 441 a.a., DNA-dependent ATPase required for recombination from Pseudomonas putida KT2440

Subject, 447 a.a., replication-associated recombination protein RarA from Escherichia coli ECRC100

 Score =  518 bits (1335), Expect = e-151
 Identities = 261/438 (59%), Positives = 329/438 (75%), Gaps = 6/438 (1%)

Query: 6   SEPVAQPLAARLRPSSLDEYVGQEHLLARGKPLREALEQGALHSMIFWGPPGVGKTTLAR 65
           S+   QPLAAR+RP +L +Y+GQ+HLLA GKPL  A+E G LHSMI WGPPG GKTTLA 
Sbjct: 9   SDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAE 68

Query: 66  LLAQFCDAHFETVSAVLAGVKEIRQAVEVAKQQAGQYGRRTILFVDEVHRFNKSQQDAFL 125
           ++A++ +A  E +SAV +GVKEIR+A+E A+Q     GRRTILFVDEVHRFNKSQQDAFL
Sbjct: 69  VIARYANADVERISAVTSGVKEIREAIERARQNRNA-GRRTILFVDEVHRFNKSQQDAFL 127

Query: 126 PYVEDGTLLFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVNRALTEE-RGLGK 184
           P++EDGT+ FIGATTENPSFELN+ALLSRARVY+LKSL    + +++ +A+ ++ RG G 
Sbjct: 128 PHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGG 187

Query: 185 RNLRVGDDAFKMLMAAADGDGRRMLNFLENASDLAEDGSE----IDVEMLQSLLGDSRRR 240
           +++ + D+  + +    +GD RR LN LE  +D+AE        +  E+L  + G+   R
Sbjct: 188 QDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSAR 247

Query: 241 FDKGGEAFYDQISALHKSVRGSNPDGALYWFARMLDGGCDPLYIARRVVRMASEDIGNAD 300
           FD  G+ FYD ISALHKSVRGS PD ALYW+AR++  G DPLY+ARR + +ASED+GNAD
Sbjct: 248 FDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNAD 307

Query: 301 PRALSLCLAAWDVQERLGSPEGELAVAQAITYLACAPKSNAVYVGFKTALREAAEHGSLE 360
           PRA+ + +AAWD   R+G  EGE A+AQAI YLACAPKSNAVY  FK AL +A E    +
Sbjct: 308 PRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYD 367

Query: 361 VPLHLRNAPTKLMKQLGYGDEYRYAHDEPDAYAAGEDYFPDELEPRQYYQPVPRGLELKI 420
           VP+HLRNAPTKLMK++GYG EYRYAHDE +AYAAGE YFP E+   +YY P  RGLE KI
Sbjct: 368 VPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKI 427

Query: 421 GEKLRHLADLDRNSPRQR 438
           GEKL  LA+ D+NSP +R
Sbjct: 428 GEKLAWLAEQDQNSPIKR 445