Pairwise Alignments

Query, 675 a.a., permease from Pseudomonas putida KT2440

Subject, 468 a.a., Sialic acid TRAP transporter large permease protein SiaM from Xanthobacter sp. DMC5

 Score = 80.1 bits (196), Expect = 2e-19
 Identities = 91/407 (22%), Positives = 161/407 (39%), Gaps = 30/407 (7%)

Query: 185 FILFGAFLEQAGMIRLFTDFAMGLFGHRSGGPAKVSVFSSALMGTITGSGVANVVTTGQF 244
           FIL G  +  AG+      FA+ L G   GG  +V++  S +   ++G+ +A+    G  
Sbjct: 60  FILAGNLMNIAGVTGRIYAFAVALVGWMRGGLGQVNIIGSVIFSGMSGTAIADAAGLGTI 119

Query: 245 TIPLMKRFGYKPAFAGGVEATSSMGSQLMPPVMGAVAFIMAETINVP--YAEVAKAALIP 302
            I  MK  GY   FA GV A S+    ++PP +  V + M   +++   +       ++ 
Sbjct: 120 EIKAMKDHGYSTEFAVGVTAASATLGPIIPPSLPFVIYGMLANVSIGALFLGGVVPGVVM 179

Query: 303 ALLYFGSVYWMVHLEARRSHLHGLPREQCPSAWDALRQRWFLLVPLMVLVALLFSGRTPL 362
            LL  G+V +  H     S               A   R  L   + V++ L F     +
Sbjct: 180 TLLMMGTVAYFAHRNGWGSDA-------------AFNWRQLLSASIEVVIVLAFPAAVYV 226

Query: 363 YSGMVGLALTAIVILGSAIILRAQKTWLRAAFW------VALGILCSGFFRMGIGVILMV 416
               VGL+    V++  A+++     +  +A        + +G +  G+F      +  V
Sbjct: 227 MI-EVGLSTNQAVLIALAVLIALDWYFDFSAVMALMTPVILIGGMTLGWFTPTEAAVAAV 285

Query: 417 IAGLAIACCFVQGGRATLHACVMALAEGARHAVPVGIACALVGVIIGVISLTGLATTFAG 476
           I  L +    V+    TL     A  +       V        +   +++ +  A   + 
Sbjct: 286 IWSLFLG--LVRYRSMTLKTLAKATFDTIETTASVLFIVTAASIFAWLLTASQAAQMLSD 343

Query: 477 YILDLGRDNLFLSLVLTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVF 536
            IL     N ++ L L  L  L +G  I TI    I   I  P +L+LG+  I   + + 
Sbjct: 344 AILGF-TQNKWVFLALANLLILFVGCFIDTIAAITILVPILLPIVLKLGIDPIHFGLIMT 402

Query: 537 YFGILADLTPPVALACFAAAPIAKEKGLLISFWAVRIALAGFVVPFM 583
              ++  L PP+ +  F  A +A+     +S     +A+  ++VP M
Sbjct: 403 LNLMIGLLHPPLGMVLFVLARVAR-----LSVERTTMAILPWLVPLM 444