Pairwise Alignments

Query, 675 a.a., permease from Pseudomonas putida KT2440

Subject, 650 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 78.2 bits (191), Expect = 1e-18
 Identities = 101/401 (25%), Positives = 164/401 (40%), Gaps = 45/401 (11%)

Query: 129 PIICALFLAYGLLGQHLPGELAHRG--YGLDQIV------NQLAFGTEGLYGTPTYVSAT 180
           PI+    + + LLG  +   LA  G  +GL  I         L    E +YGT       
Sbjct: 49  PIMFGALVLFLLLGYPVAFSLAANGLIFGLIGIYLGLFEPKFLQALPERVYGTMNNEVLL 108

Query: 181 YIYLFILFGAFLEQAGMIRLFTDFAMGLFGHRSGGPAKVSVFSSALMGTITGSGVANVVT 240
            +  F   G  LE++GM     D    +FG   GG A   +F  AL+   TG   A+V++
Sbjct: 109 AVPFFTFMGLILERSGMAEDLLDTIGQVFGSIRGGLAYAVIFVGALLAATTGVVAASVIS 168

Query: 241 TGQFTIPLMKRFGYKPAFAGGVEATSSMGSQLMPPVMGAVAFIMAETINVPYAEVAKAAL 300
            G  ++P+M R+GY    A GV A S   +Q++PP +  V  +MA+ +N    ++ + A 
Sbjct: 169 MGLISLPIMLRYGYDRRVASGVIAASGTLAQIIPPSL--VLIVMADQLNRSVGDMYEGAF 226

Query: 301 IPALLYFG--SVYWMVHLEARRSHLHGLPREQCPSAWDALRQRWFLLVPLMVLVALLFSG 358
           +P LL     +VY  +      +   GLP E        LR      +P  ++ A+  +G
Sbjct: 227 VPGLLLASLYAVYIFIISSIFPNAAPGLPLEA-----QTLRDPEQKTLPSRIMGAVAAAG 281

Query: 359 RTPLYS----------GMVGLALTAIVILGSAIIL----RAQKTWLRAAFWVALGILCSG 404
              L +           + G+A  A+  +GS ++L          L  + ++AL +  +G
Sbjct: 282 FAFLIARGSLPGLTAGALPGVANMAVWGIGSFVVLFFIMSGTAKLLTPSLFIALALSIAG 341

Query: 405 FFRM---------GIGVILMVIAGLAIACCFVQGGRATLHACVMALAEGARHAV--PVGI 453
              +            V+L + A + IA       R      +  LAE     +  P+ +
Sbjct: 342 AIELMEMSHVKFGADYVVLTMSATVGIAFVVAVINRVFRLKLLSKLAEQVVFVMVPPLAL 401

Query: 454 ACALVGVI-IGVISLT--GLATTFAGYILDLGRDNLFLSLV 491
              ++G I IGV + T  G   +    IL   R  L   L+
Sbjct: 402 IFLVLGTIFIGVATPTEGGAMGSLGAVILAFARGRLKFDLL 442



 Score = 30.0 bits (66), Expect = 4e-04
 Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 31/217 (14%)

Query: 115 LVFEAARRVMGIALPIICALFLAYG--LLGQHLPGELAHRGYGLDQIVNQLAFGTE--GL 170
           L+ + A +V+ + +P +  +FL  G   +G   P E    G  L  ++   A G     L
Sbjct: 383 LLSKLAEQVVFVMVPPLALIFLVLGTIFIGVATPTEGGAMG-SLGAVILAFARGRLKFDL 441

Query: 171 YGTPTYVSA--TYIYLFILFGAFLEQAGMIRLFTDFAMGLFGHR---------SGGPAKV 219
               TY +A  +   LFIL GA        R+F+    G+ GH+          GG    
Sbjct: 442 LRQATYSTAKLSAFVLFILLGA--------RVFSLTFYGVDGHKWVEELLVSLPGGQTGF 493

Query: 220 SVFSSALMGTITGSGVANVVTTGQFTIPLM----KRFGYKPAFAGGVEATSSMGSQLMPP 275
            +  +AL+  +  +   +        IPL+     + G    + G + A +   S + PP
Sbjct: 494 LIAVNALVFVL--AFFLDYFELAFIIIPLLGPAADKMGIDLIWFGVMLAVNMQTSFMHPP 551

Query: 276 VMGAVAFIMAETINVPYAEVAKAALIPALLYFGSVYW 312
              A+ F+ +    VPY +     ++  +   G +YW
Sbjct: 552 FGFALFFLRSVAAKVPYVDRVTGKMMQPVT-TGQIYW 587