Pairwise Alignments

Query, 675 a.a., permease from Pseudomonas putida KT2440

Subject, 425 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score = 70.9 bits (172), Expect = 1e-16
 Identities = 90/375 (24%), Positives = 153/375 (40%), Gaps = 38/375 (10%)

Query: 182 IYLFILFGAFLEQAGMIRLFTDFAMGLFGHRSGGPAKVSVFSSALMGTITGSGVANVVTT 241
           I  FIL G  +E  G+ R   +FA  + G   GG     V +  +   ++GS VA     
Sbjct: 57  IPFFILAGNLMETGGISRRLVEFAKSIVGGVQGGLPMTCVLTCMIFAAVSGSSVATTFAI 116

Query: 242 GQFTIPLMKRFGYKPAFAGGVEATSSMGSQLMPPVMGAVAFIMAETINVPYAEVAKAALI 301
           G   IP + + GY  ++A  ++ATS+    ++PP +  + + ++  +++   E+  A   
Sbjct: 117 GAILIPALIKHGYPTSYAAALQATSAELGVIIPPSIPMILYGVSAEVSI--GELFIAGFG 174

Query: 302 P------ALLYFGSVYWMVHLEARRSHLHGLPREQCPSAWDALRQRWFLLVPLMVLVALL 355
           P      AL+ F  VY       +      +P  +  + W A    W LL+P+++L  + 
Sbjct: 175 PGILISLALMLFVWVYCKWKGWGKNDGEGRMPFGR--ALWQA---GWALLMPVIILGGIY 229

Query: 356 FSGRTPLYSGMVGL--ALTAIVILGSAIILRAQKTWLRAAFWVALGILCSGFFRMGIGVI 413
               TP  +  V +  AL   +++   I L+     LR +              M   VI
Sbjct: 230 GGVFTPTEASAVAVFYALVVGMVIYREIKLKDLYVILRKSV-------------MSSAVI 276

Query: 414 LMVIAGLAI-ACCFVQGG--RATLHACVMALAEGARHAVPVGIACALVGVIIGV-ISLTG 469
           + +IA   + A    + G   A  H     L   A   + V  A  ++G+ I    ++  
Sbjct: 277 MFIIANAGLFAFLITRAGVPDAIGHWLQQVLQSPAMFLLGVNAALFVIGMFIETSAAIIV 336

Query: 470 LATTFAGYILDLGRDNLFLSLVLTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLI 529
           LA   A   +  G D +   L+  M+  L LGM  P        +  AA  +  + +  I
Sbjct: 337 LAPILAPVAVHFGIDPVHFGLI--MVVNLALGMITPPFG----VNLFAACTVARISLDRI 390

Query: 530 VSHMFVFYFGILADL 544
           V H+  F   I+A L
Sbjct: 391 VRHLVPFVLVIMACL 405