Pairwise Alignments

Query, 675 a.a., permease from Pseudomonas putida KT2440

Subject, 450 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score = 73.2 bits (178), Expect = 2e-17
 Identities = 112/491 (22%), Positives = 186/491 (37%), Gaps = 83/491 (16%)

Query: 126 IALPIICALFLAYGLLGQHLP--------GELAHRGYGLDQIVNQLAFGTEGLYGTPTYV 177
           +AL ++   F+ + LLG  +            A+ G   +  +  +  G           
Sbjct: 1   MALTVLSLSFVLFLLLGMPVAFAIGLSCLATFAYEGLPFETAIQMMVSGMN-------VF 53

Query: 178 SATYIYLFILFGAFLEQAGMIRLFTDFAMGLFGHRSGGPAKVSVFSSALMGTITGSGVAN 237
           S   I  FI  G  +   G+      FA  L GH  GG    +V +S L G ++GS VA+
Sbjct: 54  SFLAIPFFIFSGELMLHGGIADKIVAFARSLVGHWKGGLGLANVVASTLFGGVSGSPVAD 113

Query: 238 VVTTGQFTIPLMKRFGYKPAFAGGVEATSSMGSQLMPPVMGAV--AFIMAETINVPYAEV 295
               G   IP+MKR GY  A+A  V   +S+   LMP     +  AF     +      +
Sbjct: 114 TSAMGGVMIPIMKREGYSAAYAVNVTTHASLSGALMPTSHNMIIYAFAAQAAVGTIDGHI 173

Query: 296 AKAALIPALLYFG--SVYW----MVHLEARRSHLHGLPR--------EQCPSAWDALRQR 341
            K   I  L++ G   V+W    M+     ++  HG P+        E+ P  W  + + 
Sbjct: 174 IKGVSIGDLMFAGLIPVFWIMVCMLVAAYWQAAKHGYPKRTDGSTMLERFP-GWGMVGKT 232

Query: 342 WFLLVP-LMVLVALLFSGRTPLYSGMVGLALTAIVILGSAIILR--AQKTWLRAAFWVAL 398
           +   +P LMV+V +L      +  G+      A + +  +++L   A +T  R   + +L
Sbjct: 233 FLAAIPGLMVIVIILVC----VMQGVATATEAAAIAVTYSLLLTVVAYRTMTREKLFKSL 288

Query: 399 GILCSGFFRMGIGVILMVIAGLAIACCFVQGGRATLHACVMALAEGARHAVPVGIACALV 458
                       GVIL++I            G + +    MA  E     +P  I   L+
Sbjct: 289 AKASK-----TTGVILLLI------------GVSNMLRYQMAYLE-----IPDAIETVLL 326

Query: 459 GVIIGVISLTGLATTFAGYILDLGRDNLFLSLVLTMLTCLVLGMGIPTIPNYIITSSIAA 518
                       ATT           + +L L+   +  + LG+ +    + +IT+ +  
Sbjct: 327 A-----------ATT-----------SPWLMLLYINIIQIFLGIFLDMAAHILITTPLFL 364

Query: 519 PALLELGVPLIVSHMFVFYFGILADLTPPVALACFAAAPIAKEKGLLISFWAVRIALAGF 578
           P  +++GV  +   M +     L  + PPV    F    I K      +  A    LA F
Sbjct: 365 PLAIQMGVGPVQFGMMLLLNCALGLVHPPVGTVQFIGCAIGKISIGEATKTAWPYYLAIF 424

Query: 579 VVPFMAVYDPA 589
           +   +  Y PA
Sbjct: 425 IAITLVTYVPA 435