Pairwise Alignments

Query, 675 a.a., permease from Pseudomonas putida KT2440

Subject, 426 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score =  104 bits (260), Expect = 7e-27
 Identities = 103/412 (25%), Positives = 179/412 (43%), Gaps = 61/412 (14%)

Query: 185 FILFGAFLEQAGMIRLFTDFAMGLFGHRSGGPAKVSVFSSALMGTITGSGVANVVTTGQF 244
           F+L G  +   G+ +   D A+ L GH  GG   V++ +  L+  ++GS VA+       
Sbjct: 62  FMLAGEIMNVGGLSKRIVDLALALVGHVKGGLGYVTIMAGCLLSALSGSAVADAAALTAL 121

Query: 245 TIPLMKRFGYKPAFAGGVEATSSMGSQLMPPVMGAVAFIMAETINVPYAEVAKAALIPAL 304
            +P+M + G+  A AGG+ A + +   ++PP +G V F +A   NV  +++  AA++P L
Sbjct: 122 LLPMMVKAGHDKARAGGLIAATGIIGPVIPPSIGLVIFGVA--ANVSISKLFMAAIVPGL 179

Query: 305 LYFGSVY----WMVHLEARRSHLHGLPREQCPSAWDALRQRWFLLVPLMVLVALLFSGRT 360
           L  G+++    W+V  E  +       RE   +A DA    W LL+P+++LV L     T
Sbjct: 180 LIGGALWVTWAWLVRHEKIQPPPRKPAREVMKAARDA---GWALLLPVIILVGLRMGVFT 236

Query: 361 PLYSGMVGLALTAIVILGSAIILRAQKTWLRAAFWVALGILCSGFFRMGIGVILMVIAGL 420
           P  + +V                         AF+VA               I   ++  
Sbjct: 237 PTEAAVVAAVY---------------------AFFVAT-------------FIYRELSFD 262

Query: 421 AIACCFVQGGRATLHACVMALAEGARHAVPVGIACALVGVIIGVISLTGLATTFAGYILD 480
           A+   FV   + +  A VM L           IA A+V     +I++  L +   G +L+
Sbjct: 263 ALYKVFVSAAKTS--AVVMFL-----------IAAAMVSA--WLITVADLPSKVVG-LLE 306

Query: 481 LGRDNLFLSLVLTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGV-PLIVSHMFVFYFG 539
               N  L +++ ML  + +G  +   P  +I + +  P ++  G+ P+    MF+    
Sbjct: 307 PFMGNKILLMIMVMLLVMAVGTAMDMTPTILILTPVLMPVVIAAGIDPVYFGVMFIINNS 366

Query: 540 ILADLTPPVALACFAAAPIAKEKGLLISFWAVRIALAGFVVPFMAVYDPALM 591
           I   +TPPV +     A + K K   ++   +    A F + F+ V  P L+
Sbjct: 367 I-GLITPPVGVVLNVVAGVGKMKMDDVTRGVLPFMAAEFAIMFVMVIFPQLV 417