Pairwise Alignments

Query, 675 a.a., permease from Pseudomonas putida KT2440

Subject, 426 a.a., D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) from Pseudomonas putida KT2440

 Score = 83.6 bits (205), Expect = 2e-20
 Identities = 103/415 (24%), Positives = 168/415 (40%), Gaps = 57/415 (13%)

Query: 182 IYLFILFGAFLEQAGMIRLFTDFAMGLFGHRSGGPAKVSVFSSALMGTITGSGVANVVTT 241
           I  F+L GA + + GM R    FA  L G   GG + V++ +S   G I+GS VA+  + 
Sbjct: 58  IPFFVLAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASV 117

Query: 242 GQFTIPLMKRFGYKPAFAGGVEATSSMGSQLMPPVMGAVAFIMAETINVPYAEVAKAALI 301
           G   IP M+R GY   F+  V  + S+ + L PP   +V + +A    V  A +  A ++
Sbjct: 118 GSVLIPEMERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGIM 177

Query: 302 PALLYFGSVYWMVHLEA-RRSHLHG--LP-REQCPSAWDALRQRWFLLVPLMVLVALLFS 357
           P LL    +  +  + A +R++  G  +P RE    A +AL   W L+  +++L  +L  
Sbjct: 178 PGLLLSAVMMGLCLIFAKKRNYPKGEVIPLREALKIAGEAL---WGLMAMVIILGGILSG 234

Query: 358 GRTPLYSGMVGLALTAIVILGSAIILRAQKTWLRAAFWVALGILCSGFFRMGIGVILMVI 417
             T   S  V +  +  V +    I R  K       W  L  L     R  I +++++I
Sbjct: 235 VFTATESAAVAVVWSFFVTM---FIYRDYK-------WRDLPKLMHRTVRT-ISIVMILI 283

Query: 418 AGLAIACCFVQGGRATLHACVMALAEGARHAVPVGIACALVGVIIGVISLTGLATTFAGY 477
                       G A     VM L +     +P  I  A + +                 
Sbjct: 284 ------------GFAASFGYVMTLMQ-----IPSKITTAFLTL----------------- 309

Query: 478 ILDLGRDNLFLSLVLTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFY 537
                 DN ++ L+      ++LG  +   P  +I + I  P +  +GV  +   M +  
Sbjct: 310 -----SDNRYVILMCINFMLMLLGTVMDMAPLILILTPILLPVITGIGVDPVHFGMIMLV 364

Query: 538 FGILADLTPPVALACFAAAPIAKEKGLLISFWAVRIALAGFVVPFMAVYDPALMM 592
              +  +TPPV    F  + I K          +   LA F+V     Y PA+ +
Sbjct: 365 NLGIGLITPPVGAVLFVGSAIGKVSIESTVKALMPFYLALFLVLMAVTYIPAISL 419