Pairwise Alignments

Query, 212 a.a., HTH-type transcriptional repressor NicS from Pseudomonas putida KT2440

Subject, 235 a.a., Transcriptional regulator RutR of pyrimidine catabolism (TetR family) from Variovorax sp. SCN45

 Score = 48.9 bits (115), Expect = 8e-11
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 9   RAQQADRTRDNILKAAVKVFSKEGFTGGRIEQISTLAKSNDRMIYYYFGSKEKLFISVLE 68
           R +Q +  R  IL AA+ +FS+ G  G  I+Q++  A  +   + YYF +KE+L+++VL 
Sbjct: 35  RLRQIEDKRSAILGAALGLFSRFGLHGTSIDQVAARADVSKSNLLYYFANKEELYVNVLR 94

Query: 69  HIYASFNQAEAKLRLDLADPEQALRELVAFIWDYYVRHPEFVTILATENLHQG---LHAR 125
            + A + +       +  DP +A+   +          P+   +   E + QG   L   
Sbjct: 95  DLLALWLEPLRGFSAE-QDPAEAIGGYIRRKLVVSRDRPDASRLFCLEMI-QGAPLLRDE 152

Query: 126 KSQNLRALSGEAVGVLRPIIEAGQ 149
             + LRAL  +   V+R  +EAG+
Sbjct: 153 LDRELRALVEKKSEVIRAWVEAGK 176