Pairwise Alignments

Query, 432 a.a., putative Phage integrase from Pseudomonas putida KT2440

Subject, 411 a.a., integrase from Pseudomonas simiae WCS417

 Score = 79.7 bits (195), Expect = 2e-19
 Identities = 107/411 (26%), Positives = 172/411 (41%), Gaps = 66/411 (16%)

Query: 15  RRQATDKSVRDLRDPRHP--------GLYLRFWSSRERGTWHLVRGKK------WVPIAR 60
           RR   D ++  L +P H         GLY R   + ++ +W L R KK      W+ +  
Sbjct: 8   RRPLADTTLAGL-EPEHATYREQDGNGLYFRVKPNGQK-SWEL-RYKKPDGKWSWLGLGG 64

Query: 61  WPELSVAAVLAELPALRQRLMRHPATAPVVSGMA--------------TVGQLLDWYVDR 106
           +PE+S +  LA   A + R        P+VS  A               +G+  +W+  R
Sbjct: 65  YPEISGS--LARQKAAQLREDASTGKNPLVSKQARKVADQVAANNTFEALGR--EWFEAR 120

Query: 107 MSHDRSLSAKRKAATRAAIGQHVRPCLGDLPIKYITAELIDKHLIWPG-----QAKLSLS 161
            +   S +++R      A+  HV P  G    K +  E++   L W       + K  + 
Sbjct: 121 RTSWESGTSRR---VLGALELHVFPVFG----KRVYTEILP--LEWMEFLRGMEQKGIIE 171

Query: 162 YLRQMFGMLLTAFRQALKLGMIDSNPMAGVRFNDFTKAKILPKAARLRSVQLPELMQQLA 221
            + ++       +  A   G    NP+ G+  + F +++     A +   +LP L++ + 
Sbjct: 172 QMGRVRAFCKEIYDLARVTGRAVHNPLEGL--SKFLQSRSAENYAHVSIEELPALLRAIN 229

Query: 222 QAFEAAPNDAMLALMMLAH-GTRIGETRMARWSEVSLAASEWFIPAAHTKTRTEHRLPLT 280
               A   D  + L +L+   +R  E R ARWSE+ L    W IPA   K R EH +PL+
Sbjct: 230 SYPHA--KDVRIGLRLLSLLASRPSEIREARWSEIDLTKKLWTIPAERMKRRREHVVPLS 287

Query: 281 AQLKALLTRYRGIQQARGYEGVY--LFPNRRGHCL--SETQASMVFTRLG-QGEWTSHDL 335
            Q    LT  R +       G Y  LFP R+   +  S T   M   RLG  G  T H  
Sbjct: 288 RQSIEALTELRTL------TGAYPLLFPGRKDRTIPRSNTVFLMALRRLGYAGRQTGHGF 341

Query: 336 RKVSRSTWTDLGIDGHIGEMLLNHTLGKIASTYIHTQAMEQRKLALEKWHA 386
           R ++ +   + G D +  E  L+H    IA  Y     + QR++ ++ W+A
Sbjct: 342 RHIASTILNEQGFDENHIEAQLSHAKEGIAGVYNKAVYLPQRRVMMQ-WYA 391