Pairwise Alignments

Query, 432 a.a., putative Phage integrase from Pseudomonas putida KT2440

Subject, 400 a.a., Phage integrase from Sphingobium sp. HT1-2

 Score = 69.7 bits (169), Expect = 2e-16
 Identities = 70/271 (25%), Positives = 116/271 (42%), Gaps = 21/271 (7%)

Query: 131 PCLGDLPIKYITA-ELIDKHLIWPGQAKLSLSYLRQMFGMLLTAFRQALKLGMIDSNPMA 189
           P LGD  I  IT+ EL+       G+ +   +  R++  +    FR A+  G  + +  A
Sbjct: 133 PSLGDRKIGEITSMELLAVLRQVEGRGRHETA--RRLRSVCGRVFRYAIATGRAEHDLSA 190

Query: 190 GVRFNDFTKAKILPKAARLRSVQLPELMQQLAQAFEAAPNDAML--ALMMLAHG-TRIGE 246
            +R      A   PK   L ++   + +  L +A +     A+   AL +  H   R GE
Sbjct: 191 NLR-----DALTTPKVKHLAAITSSQQVGPLLRAIDGFDGHAVTKAALRLAPHVFVRPGE 245

Query: 247 TRMARWSEVSLAASEWFIPAAHTKTRTEHRLPLTAQLKALLTRYRGIQQARGYEGVYLFP 306
            R A W E+    + W IPA   K R  HR+PL+ Q   +L+  R +  A    G ++FP
Sbjct: 246 LRHAEWPEIDFEKALWSIPAEKMKMRRPHRVPLSRQSLTILSSIREVTGA----GKFVFP 301

Query: 307 NRRG--HCLSETQASMVFTRLGQG--EWTSHDLRKVSRSTWTDLG--IDGHIGEMLLNHT 360
             +     +SE   +    RLG    E TSH  R ++ +   ++G      I   L +  
Sbjct: 302 GFQSLKRPMSENALNGALRRLGYSGDEMTSHGFRAMASTLLNEMGKWHPDAIERQLAHAE 361

Query: 361 LGKIASTYIHTQAMEQRKLALEKWHAWLDRI 391
              +   Y   +  E+R + ++ W  +LD +
Sbjct: 362 ADAVRRAYARGEYWEERVVMMQAWSDYLDEL 392



 Score = 24.6 bits (52), Expect = 0.006
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 59  ARWPELSVAAVLAELPALRQRLMRHPATAPVVSGMATV 96
           A WPE+     L  +PA + + MR P   P+     T+
Sbjct: 249 AEWPEIDFEKALWSIPAEKMK-MRRPHRVPLSRQSLTI 285