Pairwise Alignments

Query, 602 a.a., putative Phage terminase, large subunit from Pseudomonas putida KT2440

Subject, 520 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  197 bits (500), Expect = 1e-54
 Identities = 156/548 (28%), Positives = 250/548 (45%), Gaps = 64/548 (11%)

Query: 46  LEEGPKRGLTWDLDAANKAIRFYRTVLKLNGGEFEGLPFELLPWQKFIVGSIFGW-KSSD 104
           L++  +  +T+ +   N A  F   ++ + G ++ G P  L P+Q +I+ +IFGW + SD
Sbjct: 2   LDDFDRSDITFAVKYINHACAFVEALVHIKG-QWAGQPIRLEPFQVWIIANIFGWVRKSD 60

Query: 105 GYRRFRVVYVESGKGSGKSPLAAGVGLTGLIADNEARAEIYAAATKKDQAMILFRDAVAM 164
           G RRFR  +V   + SGKS +AA + L    AD E  AE Y  A+   QA  +F  A  M
Sbjct: 61  GLRRFRSAFVLLPRKSGKSLIAAAIALYMTFADGEPGAEGYTGASNLAQANEVFTPAKRM 120

Query: 165 VQQSPE---------LTKRLVCSGTGQNIWNLAYLKSGSFFRPISSDDGQSGPRPHMALI 215
            + SP          + K + C  TGQ+            F P+ +   + G  PH+A+ 
Sbjct: 121 AELSPHFLETFGVEVMAKSVFCEATGQS------------FVPVIAKT-KDGSSPHLAIC 167

Query: 216 DEVHEHKTNMVVEMMRAGTKSRKQALIFMITNSGSNKRGPCWEYHEYGSRVASGALTDDG 275
           DE+H+   +  ++  R G  +R+Q L+ +I+ +G+N  G C         V  G   DD 
Sbjct: 168 DELHQAIDDTQIQAFRTGMGARRQPLLLVISTAGTNLAGVCRTEQLAAEAVLRGGSIDDK 227

Query: 276 FFAYICSLDEGDDPIQDESCWFKSNPSLQDADLPGMKYLREQVTEARGMPSKEAMVRRLN 335
            FA I ++D  DD  +D   W K+NP++  A L   ++LR+++ EA   P+K A  R  +
Sbjct: 228 LFAAIWTID-ADDDWRDFDSWIKANPAI-GASL-SEEFLRDKLNEALQSPAKAAAARTKH 284

Query: 336 FCEWTGAESPWISWDVWSQ-AEERVPMSLLRNRPSVGGLDLSSTTDLTSFVLLFYPTYED 394
             EW  + + W++ + W+  A+  + +  L  RP+    DLS+  DLTS         +D
Sbjct: 285 LNEWVASAAGWLNQNDWANAADPTLDIMALAGRPAFLAADLSTKQDLTSINAAV--PLDD 342

Query: 395 PHWRLLPYFWIPDHELDKREARDKVPYAAWIKSRDLETTPGRAISKLHVLRRLQTICDFF 454
               + P+   P+  +    + +   YA W++  DL  TPG A S      RL+ +   F
Sbjct: 343 GRLAIFPWCMAPEGAV--TNSPNSSAYAEWVERGDLIQTPGSASSFAEAEERLEWLRQHF 400

Query: 455 QVDKIAFDRWRIEDMRQLMSEYDIT-LPELVEFGQGFKDMGPAVDEFERRLLGMIEQQPE 513
            V    FD+W+ E +RQ    Y+   +P ++           A+D+FE  L   +     
Sbjct: 401 DVKVAVFDQWQGEAVRQ---RYEAAGVPTMIWQANNRGAWTMAMDDFEADLKNGL----- 452

Query: 514 EEGGAAEFFDDALPAEAVESLRHDGNPVMTWCAGNAVIVSDPANNRKADKAKATG--RID 571
                               + H GN V+ WCA N +  S     R   K       +ID
Sbjct: 453 --------------------VVHPGNAVLDWCAAN-ICASTRGVTRIPVKPSGQDHLKID 491

Query: 572 GIIAAIMA 579
            ++A IMA
Sbjct: 492 AMVATIMA 499