Pairwise Alignments

Query, 369 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 359 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  400 bits (1027), Expect = e-116
 Identities = 180/350 (51%), Positives = 265/350 (75%), Gaps = 1/350 (0%)

Query: 19  VVCAEAGDAQKPSVHIYNWYDYIAPNTVKDFQKEAGVSVVYDVFDNSEVMQSKLMAGRSG 78
           ++ A  G A + +V IYNW DYIAP+T K+FQKE G+   YDV+D++E +  KLM G+SG
Sbjct: 10  MLVASIGQAAE-TVKIYNWSDYIAPDTTKNFQKETGIGFTYDVYDSNETLDGKLMTGKSG 68

Query: 79  YDVVVASADLLPNLIKAGVLKRLDRSKLPNWSHLDPDVLAKLQSNDPGNSYAAPYLWGTT 138
           YDVV  S   +   I+ G LK+LD+S+LPNW +L+P +L  L++NDPGN++  PYLWG+T
Sbjct: 69  YDVVFPSNHFMARQIQGGALKKLDKSQLPNWKNLNPVLLKALENNDPGNAHGFPYLWGST 128

Query: 139 GIGYDADKVKSLLGPDAPVNSWDLIFKEENLAKLRQCGVAMLDAPGEVIPIALHYLGLPY 198
           GIGY+ DKVK++LG +APV+SWDLIFK EN+AKL++CGVA+LD   E++P AL+YLGLP+
Sbjct: 129 GIGYNIDKVKAVLGDNAPVDSWDLIFKPENMAKLQKCGVAILDNGPELLPAALNYLGLPH 188

Query: 199 NSHNPDDYKKAQELLLKLRPHIAYFDSSRFISDLANGNVCVVLGWAGGVSDAQKASELAG 258
           +S  P+DYKKA++LL+K+RP++AYF SS++ +DLANG++CV +G++G +  A+  ++ A 
Sbjct: 189 HSKKPEDYKKAEDLLMKVRPYVAYFHSSKYTADLANGDICVAVGFSGDILQAESRAKEAK 248

Query: 259 NHRNLVYSIPREGAPVWVESMVQLNDAPNPEQGLAFINYMLRPEVIAESSNYLSYPNANK 318
           N  N+ Y+IP+EGA +W + +    DAPN   G AF+NY+LRP+V+A  +NY+ Y N N+
Sbjct: 249 NGVNIGYNIPKEGAAIWFDMVAMPADAPNEAAGYAFMNYLLRPQVMASITNYVHYANGNQ 308

Query: 319 DATALVEKKIRDNPGVYPSKDVLSTLFPLEPLPLKLERIRTRAWNTVKTG 368
            A +LV+  I+ +  +YPS +++  LF LE +PL ++R+RTR WNT++TG
Sbjct: 309 AADSLVDPAIKADTKIYPSPEMMGKLFALEAMPLNIDRVRTRVWNTIRTG 358