Pairwise Alignments

Query, 369 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 365 a.a., ABC transporter, substrate binding protein (putrescine) from Agrobacterium fabrum C58

 Score =  338 bits (867), Expect = 1e-97
 Identities = 161/350 (46%), Positives = 232/350 (66%), Gaps = 1/350 (0%)

Query: 19  VVCAEAGDAQKPSVHIYNWYDYIAPNTVKDFQKEAGVSVVYDVFDNSEVMQSKLMAGRSG 78
           +V A +  AQ+  VH+YNW DYI P  ++DF KE G+ VVYDV+D +EV+++KL+AG SG
Sbjct: 16  LVAAGSAMAQEKVVHVYNWSDYIDPVILEDFTKETGIKVVYDVYDGNEVLETKLLAGSSG 75

Query: 79  YDVVVASADLLPNLIKAGVLKRLDRSKLPNWSHLDPDVLAKLQSNDPGNSYAAPYLWGTT 138
           YDVV  ++  L   IKAGV ++LD+SKLPN  +  PD+  +L   DPGN YA  Y+WGTT
Sbjct: 76  YDVVAPTSPFLARQIKAGVYQKLDKSKLPNLKNAWPDITERLAKYDPGNEYAVNYMWGTT 135

Query: 139 GIGYDADKVKSLLGPDAPVNSWDLIFKEENLAKLRQCGVAMLDAPGEVIPIALHYLGLPY 198
           GIGY+  KVK+ LG D PV+SWD++FK EN  KL+ CG+ +LDA  E   IA++YLG   
Sbjct: 136 GIGYNVAKVKAALG-DVPVDSWDVLFKPENAEKLKSCGINILDASDETFAIAMNYLGKNP 194

Query: 199 NSHNPDDYKKAQELLLKLRPHIAYFDSSRFISDLANGNVCVVLGWAGGVSDAQKASELAG 258
           +S    D +   E+  K+RP++  F+SS +I+DLANG+ C+ +GW+G +  A+  +E A 
Sbjct: 195 DSKETADLEAGGEVYSKIRPYVKTFNSSPYINDLANGDTCISIGWSGDILQAKTRAEEAK 254

Query: 259 NHRNLVYSIPREGAPVWVESMVQLNDAPNPEQGLAFINYMLRPEVIAESSNYLSYPNANK 318
           N   + Y IP+EG  +W++S     DA N ++  AFINYM++PEV A++S+Y+ Y N N 
Sbjct: 255 NGVEVNYVIPKEGTYIWMDSFAIPADAKNVDEAHAFINYMMKPEVAAKASDYVQYANGNL 314

Query: 319 DATALVEKKIRDNPGVYPSKDVLSTLFPLEPLPLKLERIRTRAWNTVKTG 368
            + AL++  +  NPGVYP  + +  LF + P   K +R+  R W  +KTG
Sbjct: 315 PSQALMDPSVAKNPGVYPDPETMKKLFTISPYGPKEQRVLNRVWTQIKTG 364