Pairwise Alignments

Query, 386 a.a., Sensory box histidine kinase from Pseudomonas putida KT2440

Subject, 794 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

 Score =  181 bits (458), Expect = 8e-50
 Identities = 115/298 (38%), Positives = 159/298 (53%), Gaps = 30/298 (10%)

Query: 103 WALAALDVIRDESGQIIGLAKVTRDITDRRETAQQLDAV------------------RAQ 144
           W    L ++R+       +A  TR   +RR   Q+L A+                   A 
Sbjct: 395 WTSKELSLVRE-------VAHRTRQAVERRRAEQELRALAESLECKVQERTAELMKAEAT 447

Query: 145 LFQAQKLEALGQLTGGLAHDFNNMLTIIISSARLALAT-QDPARTQRMLQHILDASQRGT 203
           L Q+QK+EA+GQLTGGLAHDFNN+L  I  S  L     +D     R +     A++R  
Sbjct: 448 LRQSQKMEAVGQLTGGLAHDFNNLLGAISGSLELLKRKLEDNPGLSRYVDIGQTATKRAA 507

Query: 204 ELTQQLLSFARHRKFDVASVAPAELVNATRGLLEHALPSSIDLKVLLQPDLPLIEVDAGQ 263
            LT +LL+F+R +  +   V   +LV     L+  A+   + L+V+    +  + VD GQ
Sbjct: 508 ALTHRLLAFSRQQTLEPKVVKVNQLVGGFEELVRRAIGPQVALEVVAGIGIWPVHVDPGQ 567

Query: 264 LQMVLLNLLFNARDAIDGHGRISLTVDVVEL----FGEVEGLKGSFVRFEVEDSGEGIPT 319
           L+  LLNL  NARDA+ G GR+ +      L      E + L G +V   V D+G G+P 
Sbjct: 568 LENALLNLCINARDAMPGGGRLVIETANRSLDELAASEHQMLPGQYVSISVSDNGSGMPV 627

Query: 320 EILPRIFEPFFTTKPFGKGTGLGLSQVYGFARQSGGAICVDSEPGRGTCMRLYLPMYQ 377
           +++ R F+PFFTTKP G GTGLGLS VYGFARQSGG   + SE G GT + +YLP Y+
Sbjct: 628 DVIARAFDPFFTTKPIGVGTGLGLSMVYGFARQSGGHARIYSEVGTGTNVCMYLPRYE 685



 Score = 39.3 bits (90), Expect = 4e-07
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%)

Query: 34  PSGHVVSWNAGAQRIKGYRRDEVIGKHFSLFFTPQDCADGRPERLLCQALEQGVA-QDEG 92
           P   +V  N    R+ GY R+E++G++      P   +D    R + +AL    + Q + 
Sbjct: 11  PDNPLVFVNDAFCRLTGYSREELVGRNCRCLQGPDTDSDA--VRQIREALRNRRSIQIDV 68

Query: 93  WRVRKDGTQFWALAALDVIRDESGQIIGLAKVTRDITDRRETAQQLDAVRAQL 145
              RK+G  FW   ++  + D +G++I       D T  RE    L++  A L
Sbjct: 69  RNYRKNGEAFWNRLSIGPVHDSAGEVIYFFASQVDATFERERLLGLESSNASL 121



 Score = 29.6 bits (65), Expect = 3e-04
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 14/96 (14%)

Query: 58  GKHFSLFFTPQDCADG-------RPERLLCQALEQGVAQDEGWRV-RKDGTQFWALAALD 109
           G+  SL FT +D  +        R    + + +E G      +RV R DG   W      
Sbjct: 171 GRGESLPFTYEDLQEAVHPDDLPRMRSAVLRTIETGDDYRIEYRVVRPDGQLAWVRIVGR 230

Query: 110 VIRDESGQIIGLAKVTRDITD------RRETAQQLD 139
           + RD SG  + +A  ++DITD      R E  + LD
Sbjct: 231 LERDASGHPLSMAGTSQDITDVMLALRRNELLEMLD 266