Pairwise Alignments

Query, 386 a.a., Sensory box histidine kinase from Pseudomonas putida KT2440

Subject, 941 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  182 bits (463), Expect = 3e-50
 Identities = 107/260 (41%), Positives = 159/260 (61%), Gaps = 17/260 (6%)

Query: 123 KVTRDITDRRETAQQLDAVRAQLFQAQKLEALGQLTGGLAHDFNNMLTIIISSARLA--- 179
           +V +++ +R +     DA+R    Q+QK+E++GQLTGG+AHDFNNML +++ S  L    
Sbjct: 545 RVAQEVAERTKAE---DALR----QSQKMESVGQLTGGIAHDFNNMLAVVVGSLDLLTRR 597

Query: 180 LATQDPARTQRMLQHILDASQRGTELTQQLLSFARHRKFDVASVAPAELVNATRGLLEHA 239
           L   DP R +R +   +D ++R  +LTQ+LL+F+R +     S+   +LV+    +L H 
Sbjct: 598 LGDDDP-RARRYVDSAMDGARRAAQLTQRLLAFSRQQPLKPESIDANKLVDGMSDMLRHT 656

Query: 240 LPSSIDLKVLLQPDLPLIEVDAGQLQMVLLNLLFNARDAIDGHGRISLTVDVVELFG--- 296
           LP  I  + +L   L     D  QL+ V+LNL  NARDA+ G G++ +      L     
Sbjct: 657 LPD-IQPETVLAGGLWRAFADPNQLENVILNLAVNARDAMAGGGKLIIETANCYLDSRYA 715

Query: 297 -EVEGLK-GSFVRFEVEDSGEGIPTEILPRIFEPFFTTKPFGKGTGLGLSQVYGFARQSG 354
            E+ G+  G +V   V D+G G+P E++ R F+PFFTTK  G+GTGLGLSQVYGF +QSG
Sbjct: 716 EELIGVPAGEYVMIAVSDTGSGMPQEVVARAFDPFFTTKEVGRGTGLGLSQVYGFVKQSG 775

Query: 355 GAICVDSEPGRGTCMRLYLP 374
           G + + SE G GT +++YLP
Sbjct: 776 GHVRIYSEVGEGTTVKVYLP 795



 Score = 40.4 bits (93), Expect = 2e-07
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 76  ERLLCQALEQGVAQDEGWRV-RKDGTQFWALAALDVIRDESGQIIGLAKVTRDITDRRET 134
           +R +  AL++G      +RV R DG   W  A   V+ DESG  I    V  D+ DRR  
Sbjct: 89  QRAIEDALDKGGRYAHQYRVLRADGQYLWIEAKGHVVHDESGAPISFLGVLIDVGDRRRL 148

Query: 135 AQQLDAVRAQL 145
             + D+ RA L
Sbjct: 149 EAERDSARALL 159



 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 29  IYMLDPSGHVVSWNAGAQRIKGYRRDEVIGK-HFSLFFTPQDCAD--GRPERLLCQALEQ 85
           +Y  D  G ++  N G   + G    + IG+    L    Q  A      +R++     +
Sbjct: 170 VYAKDRDGRLMIGNHGTSELVGKVPQDYIGRTDLELLEDKQQAAAIMETDQRIMVSGRSE 229

Query: 86  GVAQDEGWRVRKDGTQFWALAALDVIRDESGQIIGLAKVTRDITDRR 132
            V ++  +    DG +   L+    +RD  G+++GL   + DIT+R+
Sbjct: 230 QVEENVDF---PDGRRAIWLSTKSPLRDLGGEVVGLVGTSLDITERK 273



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 5/131 (3%)

Query: 36  GHVVSWNAGAQRIKGYRRDEVIGKHFSLFFTPQDCADGRPERLLCQALEQGVAQ--DEGW 93
           GHV+ WN       G+ +++   + +     P D A  R +  +   ++ G +   DE  
Sbjct: 305 GHVI-WNEALGTRFGHVQEQTSAQWWLDHIHPDDRA--RIDESIHAVIDHGGSNWTDEYR 361

Query: 94  RVRKDGTQFWALAALDVIRDESGQIIGLAKVTRDITDRRETAQQLDAVRAQLFQAQKLEA 153
             R DG+  + L    V+R + G  + +     D+T+R+     L A   +L  A +   
Sbjct: 362 FRRADGSHAFVLDRGTVLRSDDGAPMRMIGAMLDLTERKAAEAALAASEERLRLATEAAD 421

Query: 154 LGQLTGGLAHD 164
           +G     L  D
Sbjct: 422 IGLWDVDLVED 432