Pairwise Alignments

Query, 481 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

Subject, 499 a.a., circadian clock protein KaiC from Pseudomonas simiae WCS417

 Score =  164 bits (415), Expect = 6e-45
 Identities = 136/491 (27%), Positives = 230/491 (46%), Gaps = 24/491 (4%)

Query: 6   KRLVTGIDGLDALLKGGLIAGASYIIQGPPGAGKTILANQLACGHVRGGGRVLVATLLSE 65
           ++  TGI+GLD +L GGL     ++++G PG GKT +A        + G   L  TL SE
Sbjct: 10  EKAATGIEGLDDILAGGLSRSHLFLLEGEPGTGKTTVALHFLQAGAKNGETSLYITL-SE 68

Query: 66  SHERLFQYLST--LDFFDPALVGDKIQFVSAFDTLEQDGL--------DAVVRLLRQEIA 115
           +   L Q  ++   D  D   + +     S  +   Q  L            R + + + 
Sbjct: 69  TERELRQGATSHGWDLDDNIHIFELTPPESLLNAEHQQSLLYSSDLELGEATRQIFEVVE 128

Query: 116 RQQASLLIVDGVLNARVRAETALDTKKFVSELQGHAAFAGCTVLLL---TSARLDEGSPE 172
           R + + ++VD +   R+ A+++L  ++ +  ++ +      TVLLL   T+  LD+    
Sbjct: 129 RVKPTRVVVDSLSEIRLLAQSSLRYRRQILAIKHYFVRYDATVLLLDDLTTESLDK--TV 186

Query: 173 HTMVDGVIELGEQLVGSRAVRH-VQLRKTRGSGALSGRHECLIDESGMQVYPRLEALFSH 231
           H++  GVI L E      A R  V++ K RG     G H+  I + G+ V+PRL A    
Sbjct: 187 HSVAHGVIRLEELTPNYGAERRRVRVVKYRGQKYRGGFHDFTIMQGGVHVFPRLVAA--- 243

Query: 232 PSQLGSGTLARISSGVPTFDEMLGGGLATGSVSLLMGPSGIGKTSLGLAFLGASTPQAP- 290
               G      ++SG+   D +LGGG+ TGS SL++GP+G GK+ + + F  A+  +   
Sbjct: 244 -EHRGGYNRQTLTSGIRELDALLGGGIETGSSSLILGPAGTGKSLISMIFAAAAVARGEK 302

Query: 291 GLHFGFYETPERLRSKAASLGYDFAAMEKGGSLQLCWQPTTEGLLDQVGARLLERVAAQG 350
              F F E    L  +  ++G D AA++  G+L +      E    +   R+   V  +G
Sbjct: 303 AALFIFDEELGLLFERMKNMGIDLAALQATGNLFIEQVDAAELTPGEFSHRVRRCVDERG 362

Query: 351 SKRVVIDSLGAFSRLAIDPTRLNAFFRALAGELRARDVSVMLTWEMRDIFGAEISAPAPD 410
            K VVIDS+  +     +   L      L   L  R  +  +T     + G ++ AP  D
Sbjct: 363 IKTVVIDSINGYQAAMPEENALILHMHELLLYLNRRGAATFMTVAQHGLVG-DMQAPV-D 420

Query: 411 LSSIVDNLMLMRFVELDSQLRRMLSVLKVRDSHHDPALHELLIVPQGITLRKAFEGACGV 470
           ++ + D ++L+R+ E   ++RR +S++K R   H+  + E  I  +G+T+ +      GV
Sbjct: 421 ITYLADTVILLRYFEAIGEVRRAISIIKKRTGTHESTIREYRIGSRGMTVGEPLNNFQGV 480

Query: 471 LSGTPTPQESG 481
           L G PT   +G
Sbjct: 481 LRGIPTYMGAG 491